breedr/server/routes/pedigree.js

const express = require('express');
const router = express.Router();
const { getDatabase } = require('../db/init');

// Helper function to calculate inbreeding coefficient
function calculateCOI(sireId, damId, generations = 5) {
  const db = getDatabase();
  
  // Get all ancestors for both parents
  function getAncestors(dogId, currentGen = 0, maxGen = generations) {
    if (currentGen >= maxGen) return [];
    
    const parents = db.prepare(`
      SELECT p.parent_type, p.parent_id, d.name
      FROM parents p
      JOIN dogs d ON p.parent_id = d.id
      WHERE p.dog_id = ?
    `).all(dogId);
    
    const ancestors = parents.map(p => ({
      id: p.parent_id,
      name: p.name,
      type: p.parent_type,
      generation: currentGen + 1
    }));
    
    parents.forEach(p => {
      ancestors.push(...getAncestors(p.parent_id, currentGen + 1, maxGen));
    });
    
    return ancestors;
  }
  
  const sireAncestors = getAncestors(sireId);
  const damAncestors = getAncestors(damId);
  
  // Find common ancestors
  const commonAncestors = [];
  sireAncestors.forEach(sireAnc => {
    damAncestors.forEach(damAnc => {
      if (sireAnc.id === damAnc.id) {
        commonAncestors.push({
          id: sireAnc.id,
          name: sireAnc.name,
          sireGen: sireAnc.generation,
          damGen: damAnc.generation
        });
      }
    });
  });
  
  // Calculate COI using path coefficient method
  let coi = 0;
  const processed = new Set();
  
  commonAncestors.forEach(anc => {
    const key = `${anc.id}-${anc.sireGen}-${anc.damGen}`;
    if (!processed.has(key)) {
      processed.add(key);
      const pathLength = anc.sireGen + anc.damGen;
      coi += Math.pow(0.5, pathLength);
    }
  });
  
  return {
    coefficient: Math.round(coi * 10000) / 100, // Percentage with 2 decimals
    commonAncestors: [...new Map(commonAncestors.map(a => [a.id, a])).values()]
  };
}

// GET pedigree tree for a dog
router.get('/:id', (req, res) => {
  try {
    const db = getDatabase();
    const generations = parseInt(req.query.generations) || 5;
    
    function buildTree(dogId, currentGen = 0) {
      if (currentGen >= generations) return null;
      
      const dog = db.prepare('SELECT * FROM dogs WHERE id = ?').get(dogId);
      if (!dog) return null;
      
      dog.photo_urls = dog.photo_urls ? JSON.parse(dog.photo_urls) : [];
      
      const parents = db.prepare(`
        SELECT p.parent_type, p.parent_id
        FROM parents p
        WHERE p.dog_id = ?
      `).all(dogId);
      
      const sire = parents.find(p => p.parent_type === 'sire');
      const dam = parents.find(p => p.parent_type === 'dam');
      
      return {
        ...dog,
        generation: currentGen,
        sire: sire ? buildTree(sire.parent_id, currentGen + 1) : null,
        dam: dam ? buildTree(dam.parent_id, currentGen + 1) : null
      };
    }
    
    const tree = buildTree(req.params.id);
    
    if (!tree) {
      return res.status(404).json({ error: 'Dog not found' });
    }
    
    res.json(tree);
  } catch (error) {
    res.status(500).json({ error: error.message });
  }
});

// GET reverse pedigree (descendants)
router.get('/:id/descendants', (req, res) => {
  try {
    const db = getDatabase();
    const generations = parseInt(req.query.generations) || 3;
    
    function buildDescendantTree(dogId, currentGen = 0) {
      if (currentGen >= generations) return null;
      
      const dog = db.prepare('SELECT * FROM dogs WHERE id = ?').get(dogId);
      if (!dog) return null;
      
      dog.photo_urls = dog.photo_urls ? JSON.parse(dog.photo_urls) : [];
      
      const offspring = db.prepare(`
        SELECT DISTINCT d.id, d.name, d.sex, d.birth_date
        FROM dogs d
        JOIN parents p ON d.id = p.dog_id
        WHERE p.parent_id = ? AND d.is_active = 1
      `).all(dogId);
      
      return {
        ...dog,
        generation: currentGen,
        offspring: offspring.map(child => buildDescendantTree(child.id, currentGen + 1))
      };
    }
    
    const tree = buildDescendantTree(req.params.id);
    
    if (!tree) {
      return res.status(404).json({ error: 'Dog not found' });
    }
    
    res.json(tree);
  } catch (error) {
    res.status(500).json({ error: error.message });
  }
});

// POST calculate COI for a trial pairing
router.post('/trial-pairing', (req, res) => {
  try {
    const { sire_id, dam_id } = req.body;
    
    if (!sire_id || !dam_id) {
      return res.status(400).json({ error: 'Both sire_id and dam_id are required' });
    }
    
    const db = getDatabase();
    const sire = db.prepare('SELECT * FROM dogs WHERE id = ? AND sex = "male"').get(sire_id);
    const dam = db.prepare('SELECT * FROM dogs WHERE id = ? AND sex = "female"').get(dam_id);
    
    if (!sire || !dam) {
      return res.status(404).json({ error: 'Invalid sire or dam' });
    }
    
    const result = calculateCOI(sire_id, dam_id);
    
    res.json({
      sire: { id: sire.id, name: sire.name },
      dam: { id: dam.id, name: dam.name },
      coi: result.coefficient,
      commonAncestors: result.commonAncestors,
      recommendation: result.coefficient < 5 ? 'Low risk' : result.coefficient < 10 ? 'Moderate risk' : 'High risk'
    });
  } catch (error) {
    res.status(500).json({ error: error.message });
  }
});

module.exports = router;