Merge pull request 'feat: Trial Pairing Simulator - COI calculator with common ancestors' (#22) from feat/trial-pairing-simulator into master

Reviewed-on: #22

client/src/App.jsx

@@ -1,11 +1,12 @@
-import { BrowserRouter as Router, Routes, Route, Link } from 'react-router-dom'
-import { Home, Users, Activity, Heart } from 'lucide-react'
+import { BrowserRouter as Router, Routes, Route, Link} from 'react-router-dom'
+import { Home, Users, Activity, Heart, FlaskConical } from 'lucide-react'
 import Dashboard from './pages/Dashboard'
 import DogList from './pages/DogList'
 import DogDetail from './pages/DogDetail'
 import PedigreeView from './pages/PedigreeView'
 import LitterList from './pages/LitterList'
 import BreedingCalendar from './pages/BreedingCalendar'
+import PairingSimulator from './pages/PairingSimulator'
 import './App.css'
 
 function App() {
@@ -39,6 +40,10 @@ function App() {
                 <Heart size={20} />
                 <span>Breeding</span>
               </Link>
+              <Link to="/pairing" className="nav-link">
+                <FlaskConical size={20} />
+                <span>Pairing</span>
+              </Link>
             </div>
           </div>
         </nav>
@@ -51,6 +56,7 @@ function App() {
             <Route path="/pedigree/:id" element={<PedigreeView />} />
             <Route path="/litters" element={<LitterList />} />
             <Route path="/breeding" element={<BreedingCalendar />} />
+            <Route path="/pairing" element={<PairingSimulator />} />
           </Routes>
         </main>
       </div>

client/src/index.css

@@ -462,3 +462,32 @@ select {
   text-transform: uppercase;
   letter-spacing: 0.05em;
 }
+
+/* Risk Badge - Pairing Simulator */
+.risk-badge {
+  display: inline-flex;
+  align-items: center;
+  gap: 0.5rem;
+  padding: 0.625rem 1.25rem;
+  border-radius: var(--radius);
+  font-size: 0.9375rem;
+  font-weight: 600;
+}
+
+.risk-low {
+  background: rgba(16, 185, 129, 0.15);
+  color: var(--success);
+  border: 1px solid rgba(16, 185, 129, 0.3);
+}
+
+.risk-med {
+  background: rgba(245, 158, 11, 0.15);
+  color: var(--warning);
+  border: 1px solid rgba(245, 158, 11, 0.3);
+}
+
+.risk-high {
+  background: rgba(239, 68, 68, 0.15);
+  color: var(--danger);
+  border: 1px solid rgba(239, 68, 68, 0.3);
+}

client/src/pages/PairingSimulator.jsx

@@ -0,0 +1,219 @@
+import { useState, useEffect } from 'react'
+import { FlaskConical, AlertTriangle, CheckCircle, XCircle, GitMerge } from 'lucide-react'
+
+export default function PairingSimulator() {
+  const [dogs, setDogs] = useState([])
+  const [sireId, setSireId] = useState('')
+  const [damId, setDamId] = useState('')
+  const [result, setResult] = useState(null)
+  const [loading, setLoading] = useState(false)
+  const [error, setError] = useState(null)
+  const [dogsLoading, setDogsLoading] = useState(true)
+
+  useEffect(() => {
+    fetch('/api/dogs')
+      .then(r => r.json())
+      .then(data => {
+        setDogs(Array.isArray(data) ? data : (data.dogs || []))
+        setDogsLoading(false)
+      })
+      .catch(() => setDogsLoading(false))
+  }, [])
+
+  const males = dogs.filter(d => d.sex === 'male')
+  const females = dogs.filter(d => d.sex === 'female')
+
+  async function handleSimulate(e) {
+    e.preventDefault()
+    if (!sireId || !damId) return
+    setLoading(true)
+    setError(null)
+    setResult(null)
+    try {
+      const res = await fetch('/api/pedigree/trial-pairing', {
+        method: 'POST',
+        headers: { 'Content-Type': 'application/json' },
+        body: JSON.stringify({ sire_id: parseInt(sireId), dam_id: parseInt(damId) })
+      })
+      if (!res.ok) {
+        const err = await res.json()
+        throw new Error(err.error || 'Failed to calculate')
+      }
+      setResult(await res.json())
+    } catch (err) {
+      setError(err.message)
+    } finally {
+      setLoading(false)
+    }
+  }
+
+  function RiskBadge({ coi, recommendation }) {
+    const isLow = coi < 5
+    const isMed = coi >= 5 && coi < 10
+    const isHigh = coi >= 10
+    return (
+      <div className={`risk-badge risk-${isLow ? 'low' : isMed ? 'med' : 'high'}`}>
+        {isLow && <CheckCircle size={20} />}
+        {isMed && <AlertTriangle size={20} />}
+        {isHigh && <XCircle size={20} />}
+        <span>{recommendation}</span>
+      </div>
+    )
+  }
+
+  return (
+    <div className="container" style={{ paddingTop: '2rem', paddingBottom: '3rem' }}>
+      {/* Header */}
+      <div style={{ marginBottom: '2rem' }}>
+        <div style={{ display: 'flex', alignItems: 'center', gap: '0.75rem', marginBottom: '0.5rem' }}>
+          <div style={{ width: '2.5rem', height: '2.5rem', borderRadius: 'var(--radius)', background: 'rgba(139,92,246,0.2)', display: 'flex', alignItems: 'center', justifyContent: 'center', color: 'var(--accent)' }}>
+            <FlaskConical size={20} />
+          </div>
+          <h1 style={{ fontSize: '1.75rem', margin: 0 }}>Trial Pairing Simulator</h1>
+        </div>
+        <p style={{ color: 'var(--text-muted)', margin: 0 }}>
+          Select a sire and dam to calculate the estimated inbreeding coefficient (COI) and view common ancestors.
+        </p>
+      </div>
+
+      {/* Selector Card */}
+      <div className="card" style={{ marginBottom: '1.5rem', maxWidth: '720px' }}>
+        <form onSubmit={handleSimulate}>
+          <div className="form-grid" style={{ marginBottom: '1.25rem' }}>
+            <div className="form-group" style={{ margin: 0 }}>
+              <label className="label">Sire (Male) ♂</label>
+              <select
+                value={sireId}
+                onChange={e => setSireId(e.target.value)}
+                required
+                disabled={dogsLoading}
+              >
+                <option value="">— Select Sire —</option>
+                {males.map(d => (
+                  <option key={d.id} value={d.id}>
+                    {d.name}{d.breed ? ` · ${d.breed}` : ''}
+                  </option>
+                ))}
+              </select>
+              {!dogsLoading && males.length === 0 && (
+                <p style={{ color: 'var(--text-muted)', fontSize: '0.8rem', marginTop: '0.4rem' }}>No male dogs registered.</p>
+              )}
+            </div>
+
+            <div className="form-group" style={{ margin: 0 }}>
+              <label className="label">Dam (Female) ♀</label>
+              <select
+                value={damId}
+                onChange={e => setDamId(e.target.value)}
+                required
+                disabled={dogsLoading}
+              >
+                <option value="">— Select Dam —</option>
+                {females.map(d => (
+                  <option key={d.id} value={d.id}>
+                    {d.name}{d.breed ? ` · ${d.breed}` : ''}
+                  </option>
+                ))}
+              </select>
+              {!dogsLoading && females.length === 0 && (
+                <p style={{ color: 'var(--text-muted)', fontSize: '0.8rem', marginTop: '0.4rem' }}>No female dogs registered.</p>
+              )}
+            </div>
+          </div>
+
+          <button
+            type="submit"
+            className="btn btn-primary"
+            disabled={!sireId || !damId || loading}
+            style={{ minWidth: '160px' }}
+          >
+            {loading ? 'Calculating…' : <><FlaskConical size={16} /> Simulate Pairing</>}
+          </button>
+        </form>
+      </div>
+
+      {/* Error */}
+      {error && <div className="error" style={{ maxWidth: '720px' }}>{error}</div>}
+
+      {/* Results */}
+      {result && (
+        <div style={{ maxWidth: '720px' }}>
+          {/* COI Summary */}
+          <div className="card" style={{ marginBottom: '1.25rem' }}>
+            <div style={{ display: 'flex', justifyContent: 'space-between', alignItems: 'flex-start', flexWrap: 'wrap', gap: '1rem' }}>
+              <div>
+                <p style={{ color: 'var(--text-muted)', fontSize: '0.8125rem', textTransform: 'uppercase', letterSpacing: '0.05em', fontWeight: 500, marginBottom: '0.25rem' }}>Pairing</p>
+                <p style={{ fontSize: '1.125rem', fontWeight: 600, margin: 0 }}>
+                  <span style={{ color: '#60a5fa' }}>{result.sire.name}</span>
+                  <span style={{ color: 'var(--text-muted)', margin: '0 0.5rem' }}>×</span>
+                  <span style={{ color: '#f472b6' }}>{result.dam.name}</span>
+                </p>
+              </div>
+              <div style={{ textAlign: 'right' }}>
+                <p style={{ color: 'var(--text-muted)', fontSize: '0.8125rem', textTransform: 'uppercase', letterSpacing: '0.05em', fontWeight: 500, marginBottom: '0.25rem' }}>COI</p>
+                <p style={{
+                  fontSize: '2rem',
+                  fontWeight: 700,
+                  lineHeight: 1,
+                  color: result.coi < 5 ? 'var(--success)' : result.coi < 10 ? 'var(--warning)' : 'var(--danger)'
+                }}>
+                  {result.coi.toFixed(2)}%
+                </p>
+              </div>
+            </div>
+
+            <div style={{ marginTop: '1.25rem' }}>
+              <RiskBadge coi={result.coi} recommendation={result.recommendation} />
+            </div>
+
+            <div style={{ marginTop: '1rem', padding: '0.75rem', background: 'var(--bg-tertiary)', borderRadius: 'var(--radius-sm)', fontSize: '0.8125rem', color: 'var(--text-secondary)' }}>
+              <strong>COI Guide:</strong> &lt;5% Low risk · 5–10% Moderate risk · &gt;10% High risk
+            </div>
+          </div>
+
+          {/* Common Ancestors */}
+          <div className="card">
+            <div style={{ display: 'flex', alignItems: 'center', gap: '0.5rem', marginBottom: '1rem' }}>
+              <GitMerge size={18} style={{ color: 'var(--accent)' }} />
+              <h3 style={{ margin: 0, fontSize: '1rem' }}>Common Ancestors</h3>
+              <span className="badge badge-primary" style={{ marginLeft: 'auto' }}>
+                {result.commonAncestors.length} found
+              </span>
+            </div>
+
+            {result.commonAncestors.length === 0 ? (
+              <p style={{ color: 'var(--text-muted)', textAlign: 'center', padding: '1.5rem 0', margin: 0 }}>
+                No common ancestors found within 5 generations. This pairing has excellent genetic diversity.
+              </p>
+            ) : (
+              <div style={{ overflowX: 'auto' }}>
+                <table style={{ width: '100%', borderCollapse: 'collapse', fontSize: '0.875rem' }}>
+                  <thead>
+                    <tr style={{ borderBottom: '1px solid var(--border)' }}>
+                      <th style={{ textAlign: 'left', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Ancestor</th>
+                      <th style={{ textAlign: 'center', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Sire Gen</th>
+                      <th style={{ textAlign: 'center', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Dam Gen</th>
+                    </tr>
+                  </thead>
+                  <tbody>
+                    {result.commonAncestors.map((anc, i) => (
+                      <tr key={i} style={{ borderBottom: '1px solid var(--border)' }}>
+                        <td style={{ padding: '0.625rem 0.75rem', fontWeight: 500 }}>{anc.name}</td>
+                        <td style={{ padding: '0.625rem 0.75rem', textAlign: 'center' }}>
+                          <span className="badge badge-primary">Gen {anc.sireGen}</span>
+                        </td>
+                        <td style={{ padding: '0.625rem 0.75rem', textAlign: 'center' }}>
+                          <span className="badge" style={{ background: 'rgba(244,114,182,0.15)', color: '#f472b6' }}>Gen {anc.damGen}</span>
+                        </td>
+                      </tr>
+                    ))}
+                  </tbody>
+                </table>
+              </div>
+            )}
+          </div>
+        </div>
+      )}
+    </div>
+  )
+}