feat: Trial Pairing Simulator - COI calculator with common ancestors #22
@@ -1,11 +1,12 @@
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import { BrowserRouter as Router, Routes, Route, Link } from 'react-router-dom'
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import { BrowserRouter as Router, Routes, Route, Link} from 'react-router-dom'
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import { Home, Users, Activity, Heart } from 'lucide-react'
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import { Home, Users, Activity, Heart, FlaskConical } from 'lucide-react'
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import Dashboard from './pages/Dashboard'
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import Dashboard from './pages/Dashboard'
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import DogList from './pages/DogList'
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import DogList from './pages/DogList'
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import DogDetail from './pages/DogDetail'
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import DogDetail from './pages/DogDetail'
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import PedigreeView from './pages/PedigreeView'
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import PedigreeView from './pages/PedigreeView'
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import LitterList from './pages/LitterList'
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import LitterList from './pages/LitterList'
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import BreedingCalendar from './pages/BreedingCalendar'
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import BreedingCalendar from './pages/BreedingCalendar'
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import PairingSimulator from './pages/PairingSimulator'
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import './App.css'
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import './App.css'
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function App() {
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function App() {
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@@ -39,6 +40,10 @@ function App() {
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<Heart size={20} />
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<Heart size={20} />
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<span>Breeding</span>
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<span>Breeding</span>
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</Link>
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</Link>
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<Link to="/pairing" className="nav-link">
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<FlaskConical size={20} />
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<span>Pairing</span>
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</Link>
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</div>
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</div>
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</div>
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</div>
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</nav>
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</nav>
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@@ -51,6 +56,7 @@ function App() {
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<Route path="/pedigree/:id" element={<PedigreeView />} />
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<Route path="/pedigree/:id" element={<PedigreeView />} />
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<Route path="/litters" element={<LitterList />} />
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<Route path="/litters" element={<LitterList />} />
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<Route path="/breeding" element={<BreedingCalendar />} />
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<Route path="/breeding" element={<BreedingCalendar />} />
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<Route path="/pairing" element={<PairingSimulator />} />
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</Routes>
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</Routes>
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</main>
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</main>
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</div>
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</div>
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@@ -461,4 +461,33 @@ select {
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color: var(--text-muted);
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color: var(--text-muted);
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text-transform: uppercase;
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text-transform: uppercase;
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letter-spacing: 0.05em;
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letter-spacing: 0.05em;
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}
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}
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/* Risk Badge - Pairing Simulator */
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.risk-badge {
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display: inline-flex;
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align-items: center;
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gap: 0.5rem;
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padding: 0.625rem 1.25rem;
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border-radius: var(--radius);
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font-size: 0.9375rem;
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font-weight: 600;
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}
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.risk-low {
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background: rgba(16, 185, 129, 0.15);
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color: var(--success);
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border: 1px solid rgba(16, 185, 129, 0.3);
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}
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.risk-med {
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background: rgba(245, 158, 11, 0.15);
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color: var(--warning);
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border: 1px solid rgba(245, 158, 11, 0.3);
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}
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.risk-high {
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background: rgba(239, 68, 68, 0.15);
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color: var(--danger);
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border: 1px solid rgba(239, 68, 68, 0.3);
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}
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219
client/src/pages/PairingSimulator.jsx
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client/src/pages/PairingSimulator.jsx
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@@ -0,0 +1,219 @@
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import { useState, useEffect } from 'react'
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import { FlaskConical, AlertTriangle, CheckCircle, XCircle, GitMerge } from 'lucide-react'
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export default function PairingSimulator() {
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const [dogs, setDogs] = useState([])
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const [sireId, setSireId] = useState('')
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const [damId, setDamId] = useState('')
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const [result, setResult] = useState(null)
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const [loading, setLoading] = useState(false)
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const [error, setError] = useState(null)
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const [dogsLoading, setDogsLoading] = useState(true)
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useEffect(() => {
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fetch('/api/dogs')
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.then(r => r.json())
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.then(data => {
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setDogs(Array.isArray(data) ? data : (data.dogs || []))
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setDogsLoading(false)
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})
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.catch(() => setDogsLoading(false))
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}, [])
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const males = dogs.filter(d => d.sex === 'male')
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const females = dogs.filter(d => d.sex === 'female')
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async function handleSimulate(e) {
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e.preventDefault()
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if (!sireId || !damId) return
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setLoading(true)
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setError(null)
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setResult(null)
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try {
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const res = await fetch('/api/pedigree/trial-pairing', {
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method: 'POST',
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headers: { 'Content-Type': 'application/json' },
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body: JSON.stringify({ sire_id: parseInt(sireId), dam_id: parseInt(damId) })
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})
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if (!res.ok) {
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const err = await res.json()
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throw new Error(err.error || 'Failed to calculate')
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}
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setResult(await res.json())
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} catch (err) {
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setError(err.message)
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} finally {
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setLoading(false)
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}
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}
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function RiskBadge({ coi, recommendation }) {
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const isLow = coi < 5
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const isMed = coi >= 5 && coi < 10
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const isHigh = coi >= 10
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return (
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<div className={`risk-badge risk-${isLow ? 'low' : isMed ? 'med' : 'high'}`}>
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{isLow && <CheckCircle size={20} />}
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{isMed && <AlertTriangle size={20} />}
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{isHigh && <XCircle size={20} />}
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<span>{recommendation}</span>
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</div>
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)
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}
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return (
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<div className="container" style={{ paddingTop: '2rem', paddingBottom: '3rem' }}>
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{/* Header */}
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<div style={{ marginBottom: '2rem' }}>
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<div style={{ display: 'flex', alignItems: 'center', gap: '0.75rem', marginBottom: '0.5rem' }}>
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<div style={{ width: '2.5rem', height: '2.5rem', borderRadius: 'var(--radius)', background: 'rgba(139,92,246,0.2)', display: 'flex', alignItems: 'center', justifyContent: 'center', color: 'var(--accent)' }}>
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<FlaskConical size={20} />
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</div>
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<h1 style={{ fontSize: '1.75rem', margin: 0 }}>Trial Pairing Simulator</h1>
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</div>
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<p style={{ color: 'var(--text-muted)', margin: 0 }}>
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Select a sire and dam to calculate the estimated inbreeding coefficient (COI) and view common ancestors.
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</p>
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</div>
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{/* Selector Card */}
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<div className="card" style={{ marginBottom: '1.5rem', maxWidth: '720px' }}>
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<form onSubmit={handleSimulate}>
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<div className="form-grid" style={{ marginBottom: '1.25rem' }}>
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<div className="form-group" style={{ margin: 0 }}>
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<label className="label">Sire (Male) ♂</label>
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<select
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value={sireId}
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onChange={e => setSireId(e.target.value)}
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required
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disabled={dogsLoading}
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>
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<option value="">— Select Sire —</option>
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{males.map(d => (
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<option key={d.id} value={d.id}>
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{d.name}{d.breed ? ` · ${d.breed}` : ''}
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</option>
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))}
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</select>
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{!dogsLoading && males.length === 0 && (
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<p style={{ color: 'var(--text-muted)', fontSize: '0.8rem', marginTop: '0.4rem' }}>No male dogs registered.</p>
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)}
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</div>
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<div className="form-group" style={{ margin: 0 }}>
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<label className="label">Dam (Female) ♀</label>
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<select
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value={damId}
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onChange={e => setDamId(e.target.value)}
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required
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disabled={dogsLoading}
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>
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<option value="">— Select Dam —</option>
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{females.map(d => (
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<option key={d.id} value={d.id}>
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{d.name}{d.breed ? ` · ${d.breed}` : ''}
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</option>
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))}
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</select>
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{!dogsLoading && females.length === 0 && (
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<p style={{ color: 'var(--text-muted)', fontSize: '0.8rem', marginTop: '0.4rem' }}>No female dogs registered.</p>
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)}
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</div>
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</div>
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<button
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type="submit"
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className="btn btn-primary"
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disabled={!sireId || !damId || loading}
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style={{ minWidth: '160px' }}
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>
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{loading ? 'Calculating…' : <><FlaskConical size={16} /> Simulate Pairing</>}
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</button>
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</form>
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</div>
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{/* Error */}
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{error && <div className="error" style={{ maxWidth: '720px' }}>{error}</div>}
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{/* Results */}
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{result && (
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<div style={{ maxWidth: '720px' }}>
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{/* COI Summary */}
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<div className="card" style={{ marginBottom: '1.25rem' }}>
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<div style={{ display: 'flex', justifyContent: 'space-between', alignItems: 'flex-start', flexWrap: 'wrap', gap: '1rem' }}>
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<div>
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<p style={{ color: 'var(--text-muted)', fontSize: '0.8125rem', textTransform: 'uppercase', letterSpacing: '0.05em', fontWeight: 500, marginBottom: '0.25rem' }}>Pairing</p>
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<p style={{ fontSize: '1.125rem', fontWeight: 600, margin: 0 }}>
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<span style={{ color: '#60a5fa' }}>{result.sire.name}</span>
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<span style={{ color: 'var(--text-muted)', margin: '0 0.5rem' }}>×</span>
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<span style={{ color: '#f472b6' }}>{result.dam.name}</span>
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</p>
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</div>
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<div style={{ textAlign: 'right' }}>
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<p style={{ color: 'var(--text-muted)', fontSize: '0.8125rem', textTransform: 'uppercase', letterSpacing: '0.05em', fontWeight: 500, marginBottom: '0.25rem' }}>COI</p>
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<p style={{
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fontSize: '2rem',
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fontWeight: 700,
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lineHeight: 1,
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color: result.coi < 5 ? 'var(--success)' : result.coi < 10 ? 'var(--warning)' : 'var(--danger)'
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}}>
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{result.coi.toFixed(2)}%
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</p>
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</div>
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</div>
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<div style={{ marginTop: '1.25rem' }}>
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<RiskBadge coi={result.coi} recommendation={result.recommendation} />
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</div>
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<div style={{ marginTop: '1rem', padding: '0.75rem', background: 'var(--bg-tertiary)', borderRadius: 'var(--radius-sm)', fontSize: '0.8125rem', color: 'var(--text-secondary)' }}>
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<strong>COI Guide:</strong> <5% Low risk · 5–10% Moderate risk · >10% High risk
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</div>
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</div>
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{/* Common Ancestors */}
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<div className="card">
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<div style={{ display: 'flex', alignItems: 'center', gap: '0.5rem', marginBottom: '1rem' }}>
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<GitMerge size={18} style={{ color: 'var(--accent)' }} />
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<h3 style={{ margin: 0, fontSize: '1rem' }}>Common Ancestors</h3>
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<span className="badge badge-primary" style={{ marginLeft: 'auto' }}>
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{result.commonAncestors.length} found
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</span>
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</div>
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{result.commonAncestors.length === 0 ? (
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<p style={{ color: 'var(--text-muted)', textAlign: 'center', padding: '1.5rem 0', margin: 0 }}>
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No common ancestors found within 5 generations. This pairing has excellent genetic diversity.
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</p>
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) : (
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<div style={{ overflowX: 'auto' }}>
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<table style={{ width: '100%', borderCollapse: 'collapse', fontSize: '0.875rem' }}>
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<thead>
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<tr style={{ borderBottom: '1px solid var(--border)' }}>
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<th style={{ textAlign: 'left', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Ancestor</th>
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<th style={{ textAlign: 'center', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Sire Gen</th>
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<th style={{ textAlign: 'center', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Dam Gen</th>
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</tr>
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</thead>
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<tbody>
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{result.commonAncestors.map((anc, i) => (
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<tr key={i} style={{ borderBottom: '1px solid var(--border)' }}>
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<td style={{ padding: '0.625rem 0.75rem', fontWeight: 500 }}>{anc.name}</td>
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<td style={{ padding: '0.625rem 0.75rem', textAlign: 'center' }}>
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<span className="badge badge-primary">Gen {anc.sireGen}</span>
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</td>
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<td style={{ padding: '0.625rem 0.75rem', textAlign: 'center' }}>
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<span className="badge" style={{ background: 'rgba(244,114,182,0.15)', color: '#f472b6' }}>Gen {anc.damGen}</span>
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</td>
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</tr>
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))}
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</tbody>
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</table>
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</div>
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)}
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</div>
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</div>
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)}
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</div>
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)
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}
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Reference in New Issue
Block a user