feat: Trial Pairing Simulator - COI calculator with common ancestors #22

Merged
jason merged 3 commits from feat/trial-pairing-simulator into master 2026-03-09 20:26:17 -05:00
3 changed files with 257 additions and 3 deletions

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@@ -1,11 +1,12 @@
import { BrowserRouter as Router, Routes, Route, Link } from 'react-router-dom' import { BrowserRouter as Router, Routes, Route, Link} from 'react-router-dom'
import { Home, Users, Activity, Heart } from 'lucide-react' import { Home, Users, Activity, Heart, FlaskConical } from 'lucide-react'
import Dashboard from './pages/Dashboard' import Dashboard from './pages/Dashboard'
import DogList from './pages/DogList' import DogList from './pages/DogList'
import DogDetail from './pages/DogDetail' import DogDetail from './pages/DogDetail'
import PedigreeView from './pages/PedigreeView' import PedigreeView from './pages/PedigreeView'
import LitterList from './pages/LitterList' import LitterList from './pages/LitterList'
import BreedingCalendar from './pages/BreedingCalendar' import BreedingCalendar from './pages/BreedingCalendar'
import PairingSimulator from './pages/PairingSimulator'
import './App.css' import './App.css'
function App() { function App() {
@@ -39,6 +40,10 @@ function App() {
<Heart size={20} /> <Heart size={20} />
<span>Breeding</span> <span>Breeding</span>
</Link> </Link>
<Link to="/pairing" className="nav-link">
<FlaskConical size={20} />
<span>Pairing</span>
</Link>
</div> </div>
</div> </div>
</nav> </nav>
@@ -51,6 +56,7 @@ function App() {
<Route path="/pedigree/:id" element={<PedigreeView />} /> <Route path="/pedigree/:id" element={<PedigreeView />} />
<Route path="/litters" element={<LitterList />} /> <Route path="/litters" element={<LitterList />} />
<Route path="/breeding" element={<BreedingCalendar />} /> <Route path="/breeding" element={<BreedingCalendar />} />
<Route path="/pairing" element={<PairingSimulator />} />
</Routes> </Routes>
</main> </main>
</div> </div>

View File

@@ -461,4 +461,33 @@ select {
color: var(--text-muted); color: var(--text-muted);
text-transform: uppercase; text-transform: uppercase;
letter-spacing: 0.05em; letter-spacing: 0.05em;
} }
/* Risk Badge - Pairing Simulator */
.risk-badge {
display: inline-flex;
align-items: center;
gap: 0.5rem;
padding: 0.625rem 1.25rem;
border-radius: var(--radius);
font-size: 0.9375rem;
font-weight: 600;
}
.risk-low {
background: rgba(16, 185, 129, 0.15);
color: var(--success);
border: 1px solid rgba(16, 185, 129, 0.3);
}
.risk-med {
background: rgba(245, 158, 11, 0.15);
color: var(--warning);
border: 1px solid rgba(245, 158, 11, 0.3);
}
.risk-high {
background: rgba(239, 68, 68, 0.15);
color: var(--danger);
border: 1px solid rgba(239, 68, 68, 0.3);
}

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@@ -0,0 +1,219 @@
import { useState, useEffect } from 'react'
import { FlaskConical, AlertTriangle, CheckCircle, XCircle, GitMerge } from 'lucide-react'
export default function PairingSimulator() {
const [dogs, setDogs] = useState([])
const [sireId, setSireId] = useState('')
const [damId, setDamId] = useState('')
const [result, setResult] = useState(null)
const [loading, setLoading] = useState(false)
const [error, setError] = useState(null)
const [dogsLoading, setDogsLoading] = useState(true)
useEffect(() => {
fetch('/api/dogs')
.then(r => r.json())
.then(data => {
setDogs(Array.isArray(data) ? data : (data.dogs || []))
setDogsLoading(false)
})
.catch(() => setDogsLoading(false))
}, [])
const males = dogs.filter(d => d.sex === 'male')
const females = dogs.filter(d => d.sex === 'female')
async function handleSimulate(e) {
e.preventDefault()
if (!sireId || !damId) return
setLoading(true)
setError(null)
setResult(null)
try {
const res = await fetch('/api/pedigree/trial-pairing', {
method: 'POST',
headers: { 'Content-Type': 'application/json' },
body: JSON.stringify({ sire_id: parseInt(sireId), dam_id: parseInt(damId) })
})
if (!res.ok) {
const err = await res.json()
throw new Error(err.error || 'Failed to calculate')
}
setResult(await res.json())
} catch (err) {
setError(err.message)
} finally {
setLoading(false)
}
}
function RiskBadge({ coi, recommendation }) {
const isLow = coi < 5
const isMed = coi >= 5 && coi < 10
const isHigh = coi >= 10
return (
<div className={`risk-badge risk-${isLow ? 'low' : isMed ? 'med' : 'high'}`}>
{isLow && <CheckCircle size={20} />}
{isMed && <AlertTriangle size={20} />}
{isHigh && <XCircle size={20} />}
<span>{recommendation}</span>
</div>
)
}
return (
<div className="container" style={{ paddingTop: '2rem', paddingBottom: '3rem' }}>
{/* Header */}
<div style={{ marginBottom: '2rem' }}>
<div style={{ display: 'flex', alignItems: 'center', gap: '0.75rem', marginBottom: '0.5rem' }}>
<div style={{ width: '2.5rem', height: '2.5rem', borderRadius: 'var(--radius)', background: 'rgba(139,92,246,0.2)', display: 'flex', alignItems: 'center', justifyContent: 'center', color: 'var(--accent)' }}>
<FlaskConical size={20} />
</div>
<h1 style={{ fontSize: '1.75rem', margin: 0 }}>Trial Pairing Simulator</h1>
</div>
<p style={{ color: 'var(--text-muted)', margin: 0 }}>
Select a sire and dam to calculate the estimated inbreeding coefficient (COI) and view common ancestors.
</p>
</div>
{/* Selector Card */}
<div className="card" style={{ marginBottom: '1.5rem', maxWidth: '720px' }}>
<form onSubmit={handleSimulate}>
<div className="form-grid" style={{ marginBottom: '1.25rem' }}>
<div className="form-group" style={{ margin: 0 }}>
<label className="label">Sire (Male) </label>
<select
value={sireId}
onChange={e => setSireId(e.target.value)}
required
disabled={dogsLoading}
>
<option value=""> Select Sire </option>
{males.map(d => (
<option key={d.id} value={d.id}>
{d.name}{d.breed ? ` · ${d.breed}` : ''}
</option>
))}
</select>
{!dogsLoading && males.length === 0 && (
<p style={{ color: 'var(--text-muted)', fontSize: '0.8rem', marginTop: '0.4rem' }}>No male dogs registered.</p>
)}
</div>
<div className="form-group" style={{ margin: 0 }}>
<label className="label">Dam (Female) </label>
<select
value={damId}
onChange={e => setDamId(e.target.value)}
required
disabled={dogsLoading}
>
<option value=""> Select Dam </option>
{females.map(d => (
<option key={d.id} value={d.id}>
{d.name}{d.breed ? ` · ${d.breed}` : ''}
</option>
))}
</select>
{!dogsLoading && females.length === 0 && (
<p style={{ color: 'var(--text-muted)', fontSize: '0.8rem', marginTop: '0.4rem' }}>No female dogs registered.</p>
)}
</div>
</div>
<button
type="submit"
className="btn btn-primary"
disabled={!sireId || !damId || loading}
style={{ minWidth: '160px' }}
>
{loading ? 'Calculating…' : <><FlaskConical size={16} /> Simulate Pairing</>}
</button>
</form>
</div>
{/* Error */}
{error && <div className="error" style={{ maxWidth: '720px' }}>{error}</div>}
{/* Results */}
{result && (
<div style={{ maxWidth: '720px' }}>
{/* COI Summary */}
<div className="card" style={{ marginBottom: '1.25rem' }}>
<div style={{ display: 'flex', justifyContent: 'space-between', alignItems: 'flex-start', flexWrap: 'wrap', gap: '1rem' }}>
<div>
<p style={{ color: 'var(--text-muted)', fontSize: '0.8125rem', textTransform: 'uppercase', letterSpacing: '0.05em', fontWeight: 500, marginBottom: '0.25rem' }}>Pairing</p>
<p style={{ fontSize: '1.125rem', fontWeight: 600, margin: 0 }}>
<span style={{ color: '#60a5fa' }}>{result.sire.name}</span>
<span style={{ color: 'var(--text-muted)', margin: '0 0.5rem' }}>×</span>
<span style={{ color: '#f472b6' }}>{result.dam.name}</span>
</p>
</div>
<div style={{ textAlign: 'right' }}>
<p style={{ color: 'var(--text-muted)', fontSize: '0.8125rem', textTransform: 'uppercase', letterSpacing: '0.05em', fontWeight: 500, marginBottom: '0.25rem' }}>COI</p>
<p style={{
fontSize: '2rem',
fontWeight: 700,
lineHeight: 1,
color: result.coi < 5 ? 'var(--success)' : result.coi < 10 ? 'var(--warning)' : 'var(--danger)'
}}>
{result.coi.toFixed(2)}%
</p>
</div>
</div>
<div style={{ marginTop: '1.25rem' }}>
<RiskBadge coi={result.coi} recommendation={result.recommendation} />
</div>
<div style={{ marginTop: '1rem', padding: '0.75rem', background: 'var(--bg-tertiary)', borderRadius: 'var(--radius-sm)', fontSize: '0.8125rem', color: 'var(--text-secondary)' }}>
<strong>COI Guide:</strong> &lt;5% Low risk · 510% Moderate risk · &gt;10% High risk
</div>
</div>
{/* Common Ancestors */}
<div className="card">
<div style={{ display: 'flex', alignItems: 'center', gap: '0.5rem', marginBottom: '1rem' }}>
<GitMerge size={18} style={{ color: 'var(--accent)' }} />
<h3 style={{ margin: 0, fontSize: '1rem' }}>Common Ancestors</h3>
<span className="badge badge-primary" style={{ marginLeft: 'auto' }}>
{result.commonAncestors.length} found
</span>
</div>
{result.commonAncestors.length === 0 ? (
<p style={{ color: 'var(--text-muted)', textAlign: 'center', padding: '1.5rem 0', margin: 0 }}>
No common ancestors found within 5 generations. This pairing has excellent genetic diversity.
</p>
) : (
<div style={{ overflowX: 'auto' }}>
<table style={{ width: '100%', borderCollapse: 'collapse', fontSize: '0.875rem' }}>
<thead>
<tr style={{ borderBottom: '1px solid var(--border)' }}>
<th style={{ textAlign: 'left', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Ancestor</th>
<th style={{ textAlign: 'center', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Sire Gen</th>
<th style={{ textAlign: 'center', padding: '0.625rem 0.75rem', color: 'var(--text-muted)', fontWeight: 500, fontSize: '0.75rem', textTransform: 'uppercase', letterSpacing: '0.05em' }}>Dam Gen</th>
</tr>
</thead>
<tbody>
{result.commonAncestors.map((anc, i) => (
<tr key={i} style={{ borderBottom: '1px solid var(--border)' }}>
<td style={{ padding: '0.625rem 0.75rem', fontWeight: 500 }}>{anc.name}</td>
<td style={{ padding: '0.625rem 0.75rem', textAlign: 'center' }}>
<span className="badge badge-primary">Gen {anc.sireGen}</span>
</td>
<td style={{ padding: '0.625rem 0.75rem', textAlign: 'center' }}>
<span className="badge" style={{ background: 'rgba(244,114,182,0.15)', color: '#f472b6' }}>Gen {anc.damGen}</span>
</td>
</tr>
))}
</tbody>
</table>
</div>
)}
</div>
</div>
)}
</div>
)
}