fix: use configured collection in recovery paths
This commit is contained in:
committed by
Igor Lins e Silva
parent
88493acd0d
commit
ec6d2dde01
+6
-2
@@ -663,8 +663,10 @@ def cmd_repair(args):
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check_extraction_safety,
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)
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config = MempalaceConfig()
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collection_name = config.collection_name
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palace_path = os.path.abspath(
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os.path.expanduser(args.palace) if args.palace else MempalaceConfig().palace_path
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os.path.expanduser(args.palace) if args.palace else config.palace_path
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)
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if getattr(args, "mode", "legacy") == "max-seq-id":
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@@ -749,7 +751,7 @@ def cmd_repair(args):
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# Try to read existing drawers
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try:
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col = backend.get_collection(palace_path, "mempalace_drawers")
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col = backend.get_collection(palace_path, collection_name)
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total = col.count()
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print(f" Drawers found: {total}")
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except Exception as e:
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@@ -784,6 +786,7 @@ def cmd_repair(args):
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palace_path,
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len(all_ids),
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confirm_truncation_ok=getattr(args, "confirm_truncation_ok", False),
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collection_name=collection_name,
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)
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except TruncationDetected as e:
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print(e.message)
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@@ -810,6 +813,7 @@ def cmd_repair(args):
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all_docs,
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all_metas,
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batch_size,
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collection_name=collection_name,
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progress=print,
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)
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except RebuildCollectionError as e:
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@@ -7,6 +7,7 @@ Priority: env vars > config file (~/.mempalace/config.json) > defaults
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import json
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import os
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import re
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from functools import lru_cache
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from pathlib import Path
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@@ -127,6 +128,13 @@ def sanitize_content(value: str, max_length: int = 100_000) -> str:
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DEFAULT_PALACE_PATH = os.path.expanduser("~/.mempalace/palace")
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DEFAULT_COLLECTION_NAME = "mempalace_drawers"
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@lru_cache(maxsize=1)
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def get_configured_collection_name() -> str:
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"""Return the configured drawer collection name without repeated config-file reads."""
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return MempalaceConfig().collection_name
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DEFAULT_TOPIC_WINGS = [
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"emotions",
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"consciousness",
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+53
-8
@@ -193,7 +193,7 @@ def _refresh_vector_disabled_flag() -> None:
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"""
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global _vector_disabled, _vector_disabled_reason, _vector_capacity_status
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try:
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info = hnsw_capacity_status(_config.palace_path, "mempalace_drawers")
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info = hnsw_capacity_status(_config.palace_path, _config.collection_name)
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except Exception:
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logger.debug("HNSW capacity probe raised", exc_info=True)
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return
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@@ -490,6 +490,7 @@ def _tool_status_via_sqlite() -> dict:
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db_path = os.path.join(_config.palace_path, "chroma.sqlite3")
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if not os.path.isfile(db_path):
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return _no_palace()
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collection_name = _config.collection_name
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wings: dict = {}
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rooms: dict = {}
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@@ -503,8 +504,9 @@ def _tool_status_via_sqlite() -> dict:
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FROM embeddings e
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JOIN segments s ON e.segment_id = s.id
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JOIN collections c ON s.collection = c.id
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WHERE c.name = 'mempalace_drawers'
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"""
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WHERE c.name = ?
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""",
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(collection_name,),
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).fetchone()
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total = int(row[0]) if row and row[0] is not None else 0
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for key, target in (("wing", wings), ("room", rooms)):
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@@ -515,12 +517,12 @@ def _tool_status_via_sqlite() -> dict:
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JOIN embeddings e ON em.id = e.id
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JOIN segments s ON e.segment_id = s.id
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JOIN collections c ON s.collection = c.id
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WHERE c.name = 'mempalace_drawers'
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WHERE c.name = ?
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AND em.key = ?
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AND em.string_value IS NOT NULL
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GROUP BY em.string_value
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""",
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(key,),
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(collection_name, key),
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):
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target[value] = count
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finally:
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@@ -720,6 +722,7 @@ def tool_search(
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n_results=limit,
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max_distance=dist,
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vector_disabled=_vector_disabled,
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collection_name=_config.collection_name,
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)
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if _vector_disabled:
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result["vector_disabled"] = True
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@@ -922,8 +925,8 @@ def tool_add_drawer(
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# Idempotency: if the deterministic ID already exists, return success as a no-op.
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try:
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existing = col.get(ids=[drawer_id])
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if existing and existing["ids"]:
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existing = col.get(ids=[drawer_id], include=[])
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if existing.ids:
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return {"success": True, "reason": "already_exists", "drawer_id": drawer_id}
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except Exception:
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logger.debug("Idempotency pre-check failed for %s", drawer_id, exc_info=True)
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@@ -943,6 +946,12 @@ def tool_add_drawer(
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}
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],
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)
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inserted = col.get(ids=[drawer_id], include=[])
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if not inserted.ids:
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raise RuntimeError(
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"Drawer write was acknowledged but the new ID is not readable. "
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"The palace index may be stale; run reconnect or repair."
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)
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_metadata_cache = None
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logger.info(f"Filed drawer: {drawer_id} → {wing}/{room}")
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return {"success": True, "drawer_id": drawer_id, "wing": wing, "room": room}
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@@ -1506,6 +1515,30 @@ def tool_reconnect():
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_palace_db_mtime, \
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_vector_disabled, \
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_vector_disabled_reason
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from . import palace as palace_module
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close_errors = []
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try:
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palace_module._DEFAULT_BACKEND.close_palace(_config.palace_path)
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except Exception as exc:
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logger.debug("Failed to close shared palace backend during reconnect", exc_info=True)
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close_errors.append(f"backend close_palace failed: {exc}")
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try:
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from chromadb.api.client import SharedSystemClient
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clear_system_cache = getattr(SharedSystemClient, "clear_system_cache", None)
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if callable(clear_system_cache):
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clear_system_cache()
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else:
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logger.debug(
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"SharedSystemClient.clear_system_cache is unavailable; skipping shared Chroma cache clear during reconnect"
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)
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except Exception as exc:
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logger.debug(
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"Failed to clear Chroma shared system cache during reconnect",
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exc_info=True,
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)
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close_errors.append(f"shared Chroma cache clear failed: {exc}")
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_client_cache = None
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_collection_cache = None
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_palace_db_inode = 0
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@@ -1527,12 +1560,24 @@ def tool_reconnect():
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try:
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col = _get_collection()
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if col is None:
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return {
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result = {
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"success": False,
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"message": "No palace found after reconnect",
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"drawers": 0,
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"vector_disabled": _vector_disabled,
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}
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if close_errors:
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result["error"] = "; ".join(close_errors)
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return result
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if close_errors:
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return {
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"success": False,
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"message": "Reconnect reopened the palace but failed to fully reset cached handles",
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"drawers": col.count(),
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"vector_disabled": _vector_disabled,
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"vector_disabled_reason": _vector_disabled_reason,
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"error": "; ".join(close_errors),
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}
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return {
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"success": True,
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"message": "Reconnected to palace",
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+6
-1
@@ -10,6 +10,7 @@ import logging
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import os
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import re
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import threading
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from typing import Optional
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from .backends.chroma import ChromaBackend
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@@ -56,10 +57,14 @@ NORMALIZE_VERSION = 2
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def get_collection(
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palace_path: str,
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collection_name: str = "mempalace_drawers",
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collection_name: Optional[str] = None,
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create: bool = True,
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):
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"""Get the palace collection through the backend layer."""
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if collection_name is None:
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from .config import get_configured_collection_name
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collection_name = get_configured_collection_name()
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return _DEFAULT_BACKEND.get_collection(
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palace_path,
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collection_name=collection_name,
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+40
-19
@@ -181,10 +181,12 @@ def _rebuild_collection_via_temp(
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all_docs,
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all_metas,
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batch_size: int,
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collection_name: Optional[str] = None,
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progress=print,
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) -> int:
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expected = len(all_ids)
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temp_name = REPAIR_TEMP_COLLECTION
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collection_name = collection_name or _drawers_collection_name()
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temp_name = f"{collection_name}__repair_tmp"
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live_replaced = False
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try:
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@@ -203,9 +205,9 @@ def _rebuild_collection_via_temp(
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_verify_collection_count(temp_col, expected, "temporary rebuild")
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progress(" Rebuilding live collection...")
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backend.delete_collection(palace_path, COLLECTION_NAME)
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backend.delete_collection(palace_path, collection_name)
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live_replaced = True
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new_col = backend.create_collection(palace_path, COLLECTION_NAME)
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new_col = backend.create_collection(palace_path, collection_name)
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rebuilt = 0
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for i in range(0, expected, batch_size):
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@@ -230,7 +232,7 @@ def _rebuild_collection_via_temp(
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raise RebuildCollectionError(str(exc), live_replaced=live_replaced) from exc
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def scan_palace(palace_path=None, only_wing=None):
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def scan_palace(palace_path=None, only_wing=None, collection_name: Optional[str] = None):
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"""Scan the palace for corrupt/unfetchable IDs.
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Probes in batches of 100, falls back to per-ID on failure.
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@@ -239,14 +241,15 @@ def scan_palace(palace_path=None, only_wing=None):
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Returns (good_set, bad_set).
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"""
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palace_path = palace_path or _get_palace_path()
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collection_name = collection_name or _drawers_collection_name()
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print(f"\n Palace: {palace_path}")
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print(" Loading...")
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col = ChromaBackend().get_collection(palace_path, COLLECTION_NAME)
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col = ChromaBackend().get_collection(palace_path, collection_name)
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where = {"wing": only_wing} if only_wing else None
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total = col.count()
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print(f" Collection: {COLLECTION_NAME}, total: {total:,}")
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print(f" Collection: {collection_name}, total: {total:,}")
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if only_wing:
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print(f" Scanning wing: {only_wing}")
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@@ -307,9 +310,10 @@ def scan_palace(palace_path=None, only_wing=None):
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return good_set, bad_set
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def prune_corrupt(palace_path=None, confirm=False):
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def prune_corrupt(palace_path=None, confirm=False, collection_name: Optional[str] = None):
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"""Delete corrupt IDs listed in corrupt_ids.txt."""
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palace_path = palace_path or _get_palace_path()
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collection_name = collection_name or _drawers_collection_name()
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bad_file = os.path.join(palace_path, "corrupt_ids.txt")
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if not os.path.exists(bad_file):
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@@ -325,7 +329,7 @@ def prune_corrupt(palace_path=None, confirm=False):
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print(" Re-run with --confirm to actually delete.")
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return
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col = ChromaBackend().get_collection(palace_path, COLLECTION_NAME)
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col = ChromaBackend().get_collection(palace_path, collection_name)
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before = col.count()
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print(f" Collection size before: {before:,}")
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@@ -379,7 +383,10 @@ class TruncationDetected(Exception):
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def check_extraction_safety(
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palace_path: str, extracted: int, confirm_truncation_ok: bool = False
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palace_path: str,
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extracted: int,
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confirm_truncation_ok: bool = False,
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collection_name: Optional[str] = None,
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) -> None:
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"""Cross-check that ``extracted`` matches the SQLite ground truth.
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@@ -401,7 +408,8 @@ def check_extraction_safety(
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if confirm_truncation_ok:
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return
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sqlite_count = sqlite_drawer_count(palace_path)
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collection_name = collection_name or _drawers_collection_name()
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sqlite_count = sqlite_drawer_count(palace_path, collection_name)
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cap_signal = extracted == CHROMADB_DEFAULT_GET_LIMIT
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if sqlite_count is not None and sqlite_count > extracted:
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@@ -437,7 +445,7 @@ def check_extraction_safety(
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raise TruncationDetected(message, sqlite_count, extracted)
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def sqlite_drawer_count(palace_path: str) -> "int | None":
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def sqlite_drawer_count(palace_path: str, collection_name: Optional[str] = None) -> "int | None":
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"""Count rows in ``chroma.sqlite3.embeddings`` for the drawers collection.
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Used as an independent ground-truth check against the chromadb
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@@ -449,6 +457,7 @@ def sqlite_drawer_count(palace_path: str) -> "int | None":
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drift, missing tables, locked file). Callers treat ``None`` as
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"unknown" and fall back to the cap-detection check.
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"""
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collection_name = collection_name or _drawers_collection_name()
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sqlite_path = os.path.join(palace_path, "chroma.sqlite3")
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if not os.path.exists(sqlite_path):
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return None
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@@ -465,7 +474,7 @@ def sqlite_drawer_count(palace_path: str) -> "int | None":
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JOIN collections c ON s.collection = c.id
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WHERE c.name = ?
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""",
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(COLLECTION_NAME,),
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(collection_name,),
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).fetchone()
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return int(row[0]) if row and row[0] is not None else None
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finally:
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@@ -477,7 +486,11 @@ def sqlite_drawer_count(palace_path: str) -> "int | None":
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return None
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def rebuild_index(palace_path=None, confirm_truncation_ok: bool = False):
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def rebuild_index(
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palace_path=None,
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confirm_truncation_ok: bool = False,
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collection_name: Optional[str] = None,
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):
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"""Rebuild the HNSW index from scratch.
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1. Extract all drawers via ChromaDB get()
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@@ -492,6 +505,7 @@ def rebuild_index(palace_path=None, confirm_truncation_ok: bool = False):
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(typically only a concern for palaces sized at exactly 10 000 rows).
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"""
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palace_path = palace_path or _get_palace_path()
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collection_name = collection_name or _drawers_collection_name()
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if not os.path.isdir(palace_path):
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print(f"\n No palace found at {palace_path}")
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@@ -504,7 +518,7 @@ def rebuild_index(palace_path=None, confirm_truncation_ok: bool = False):
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backend = ChromaBackend()
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try:
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col = backend.get_collection(palace_path, COLLECTION_NAME)
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col = backend.get_collection(palace_path, collection_name)
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total = col.count()
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except Exception as e:
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print(f" Error reading palace: {e}")
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@@ -528,7 +542,12 @@ def rebuild_index(palace_path=None, confirm_truncation_ok: bool = False):
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# short of the SQLite ground truth (or when extraction == chromadb
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# default get() cap and the SQLite check couldn't run).
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try:
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check_extraction_safety(palace_path, len(all_ids), confirm_truncation_ok)
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check_extraction_safety(
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palace_path,
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len(all_ids),
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confirm_truncation_ok,
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collection_name=collection_name,
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)
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except TruncationDetected as e:
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print(e.message)
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return
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@@ -551,6 +570,7 @@ def rebuild_index(palace_path=None, confirm_truncation_ok: bool = False):
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all_docs,
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all_metas,
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batch_size,
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collection_name=collection_name,
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progress=print,
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)
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except RebuildCollectionError as e:
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@@ -560,7 +580,7 @@ def rebuild_index(palace_path=None, confirm_truncation_ok: bool = False):
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print(f" Restoring from backup: {backup_path}")
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try:
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_close_chroma_handles(palace_path, backend=backend)
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_delete_collection_if_exists(backend, palace_path, COLLECTION_NAME)
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_delete_collection_if_exists(backend, palace_path, collection_name)
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shutil.copy2(backup_path, sqlite_path)
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print(" Backup restored. Palace is back to pre-repair state.")
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except Exception as restore_error:
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@@ -950,7 +970,7 @@ def rebuild_from_sqlite(
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backend.close()
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def status(palace_path=None) -> dict:
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def status(palace_path=None, collection_name: Optional[str] = None) -> dict:
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"""Read-only health check: compare sqlite vs HNSW element counts.
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Catches the #1222 failure mode where chromadb's HNSW segment freezes
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@@ -968,6 +988,7 @@ def status(palace_path=None) -> dict:
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``status="unknown"`` when no palace exists at the given path.
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"""
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palace_path = palace_path or _get_palace_path()
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collection_name = collection_name or _drawers_collection_name()
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print(f"\n{'=' * 55}")
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print(" MemPalace Repair — Status")
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print(f"{'=' * 55}\n")
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@@ -977,8 +998,8 @@ def status(palace_path=None) -> dict:
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print(" No palace found.\n")
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return {"status": "unknown", "message": "no palace at path"}
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drawers = hnsw_capacity_status(palace_path, "mempalace_drawers")
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closets = hnsw_capacity_status(palace_path, "mempalace_closets")
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drawers = hnsw_capacity_status(palace_path, collection_name)
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closets = hnsw_capacity_status(palace_path, CLOSETS_COLLECTION_NAME)
|
||||
|
||||
for label, info in (("drawers", drawers), ("closets", closets)):
|
||||
print(f"\n [{label}]")
|
||||
|
||||
+31
-16
@@ -382,6 +382,7 @@ def _bm25_only_via_sqlite(
|
||||
n_results: int = 5,
|
||||
max_candidates: int = 500,
|
||||
_include_internal: bool = False,
|
||||
collection_name: str = None,
|
||||
) -> dict:
|
||||
"""BM25-only search reading drawers directly from chroma.sqlite3.
|
||||
|
||||
@@ -405,6 +406,10 @@ def _bm25_only_via_sqlite(
|
||||
"error": "No palace found",
|
||||
"hint": "Run: mempalace init <dir> && mempalace mine <dir>",
|
||||
}
|
||||
if collection_name is None:
|
||||
from .config import get_configured_collection_name
|
||||
|
||||
collection_name = get_configured_collection_name()
|
||||
|
||||
def _metadata_filter_sql(row_id_expr: str) -> tuple[str, list[str]]:
|
||||
clauses = []
|
||||
@@ -441,35 +446,43 @@ def _bm25_only_via_sqlite(
|
||||
# shorter than 3 chars (trigram tokenizer can't match them).
|
||||
tokens = [t for t in _tokenize(query) if len(t) >= 3]
|
||||
candidate_ids: list[int] = []
|
||||
use_recency_fallback = not tokens
|
||||
if tokens:
|
||||
fts_query = " OR ".join(tokens)
|
||||
filter_sql, filter_params = _metadata_filter_sql("embedding_fulltext_search.rowid")
|
||||
try:
|
||||
rows = conn.execute(
|
||||
f"""
|
||||
SELECT rowid
|
||||
SELECT embedding_fulltext_search.rowid
|
||||
FROM embedding_fulltext_search
|
||||
JOIN embeddings e ON e.id = embedding_fulltext_search.rowid
|
||||
JOIN segments s ON e.segment_id = s.id
|
||||
JOIN collections c ON s.collection = c.id
|
||||
WHERE embedding_fulltext_search MATCH ?
|
||||
AND c.name = ?
|
||||
{filter_sql}
|
||||
LIMIT ?
|
||||
""",
|
||||
(fts_query, *filter_params, max_candidates),
|
||||
(fts_query, collection_name, *filter_params, max_candidates),
|
||||
).fetchall()
|
||||
candidate_ids = [r[0] for r in rows]
|
||||
except sqlite3.Error:
|
||||
# FTS5 tokenizer mismatch or syntax error — fall through
|
||||
# to the recency-window selector below.
|
||||
logger.debug("FTS5 MATCH failed; using recency fallback", exc_info=True)
|
||||
use_recency_fallback = True
|
||||
|
||||
if not candidate_ids:
|
||||
# No FTS hits (or no usable tokens) — pull the most recent
|
||||
# rows for the drawers segment so we can BM25-rank something
|
||||
# rather than return empty-handed. Wrapped in try/except
|
||||
# because the schema may differ on legacy palaces (older
|
||||
# chromadb without ``created_at``, missing ``segments``
|
||||
# rows after partial restore, etc.); on schema mismatch we
|
||||
# fall back to ordering by primary-key id and finally to an
|
||||
# empty result rather than letting search raise.
|
||||
if not candidate_ids and use_recency_fallback:
|
||||
# No usable FTS tokens, or FTS itself failed — pull the most
|
||||
# recent rows for the drawers segment so we can BM25-rank
|
||||
# something rather than return empty-handed. A clean FTS miss
|
||||
# must stay empty, especially after wing/room filtering, because
|
||||
# recency fallback would return unrelated scoped drawers.
|
||||
# Wrapped in try/except because the schema may differ on legacy
|
||||
# palaces (older chromadb without ``created_at``, missing
|
||||
# ``segments`` rows after partial restore, etc.); on schema
|
||||
# mismatch we fall back to ordering by primary-key id and finally
|
||||
# to an empty result rather than letting search raise.
|
||||
try:
|
||||
filter_sql, filter_params = _metadata_filter_sql("e.id")
|
||||
rows = conn.execute(
|
||||
@@ -478,12 +491,12 @@ def _bm25_only_via_sqlite(
|
||||
FROM embeddings e
|
||||
JOIN segments s ON e.segment_id = s.id
|
||||
JOIN collections c ON s.collection = c.id
|
||||
WHERE c.name = 'mempalace_drawers'
|
||||
WHERE c.name = ?
|
||||
{filter_sql}
|
||||
ORDER BY e.created_at DESC
|
||||
LIMIT ?
|
||||
""",
|
||||
(*filter_params, max_candidates),
|
||||
(collection_name, *filter_params, max_candidates),
|
||||
).fetchall()
|
||||
candidate_ids = [r[0] for r in rows]
|
||||
except sqlite3.Error:
|
||||
@@ -499,12 +512,12 @@ def _bm25_only_via_sqlite(
|
||||
FROM embeddings e
|
||||
JOIN segments s ON e.segment_id = s.id
|
||||
JOIN collections c ON s.collection = c.id
|
||||
WHERE c.name = 'mempalace_drawers'
|
||||
WHERE c.name = ?
|
||||
{filter_sql}
|
||||
ORDER BY e.id DESC
|
||||
LIMIT ?
|
||||
""",
|
||||
(*filter_params, max_candidates),
|
||||
(collection_name, *filter_params, max_candidates),
|
||||
).fetchall()
|
||||
candidate_ids = [r[0] for r in rows]
|
||||
except sqlite3.Error:
|
||||
@@ -720,6 +733,7 @@ def search_memories(
|
||||
max_distance: float = 0.0,
|
||||
vector_disabled: bool = False,
|
||||
candidate_strategy: str = "vector",
|
||||
collection_name: str = None,
|
||||
) -> dict:
|
||||
"""Programmatic search — returns a dict instead of printing.
|
||||
|
||||
@@ -770,10 +784,11 @@ def search_memories(
|
||||
wing=wing,
|
||||
room=room,
|
||||
n_results=n_results,
|
||||
collection_name=collection_name,
|
||||
)
|
||||
|
||||
try:
|
||||
drawers_col = get_collection(palace_path, create=False)
|
||||
drawers_col = get_collection(palace_path, collection_name=collection_name, create=False)
|
||||
except Exception as e:
|
||||
logger.error("No palace found at %s: %s", palace_path, e)
|
||||
return {
|
||||
|
||||
Reference in New Issue
Block a user