Merges develop (#820 version sync, #785 strip_noise + NORMALIZE_VERSION,
#784 file locking) and addresses six concerns surfaced during PR review
of the closet feature:
1. Closet append-on-rebuild bug — upsert_closet_lines used to APPEND to
existing closets (mismatched the doc's "fully replaced" promise). With
NORMALIZE_VERSION rebuilds on develop, this would have stacked stale
v1 topics on top of fresh v2 content forever. Fix:
- Drop the read-and-append branch from upsert_closet_lines (now a pure
numbered-id overwrite).
- Add purge_file_closets(closets_col, source_file) helper that wipes
every closet for a source file by where-filter.
- process_file calls purge_file_closets before upsert on every mine,
mirroring the existing drawer purge.
2. Searcher returned whole-file blobs from the closet path while the
direct path returned chunk-level drawers. Refactored:
- _extract_drawer_ids_from_closet parses the `→drawer_a,drawer_b`
pointers out of closet documents.
- _closet_first_hits hydrates exactly those drawer IDs (chunk-level),
not collection.get(where=source_file) (which returned everything).
- Same hit shape as direct-search path; both now carry matched_via.
3. max_distance was bypassed on the closet path. Now applied per-hit;
when every closet candidate gets filtered, _closet_first_hits returns
None and the caller falls through to direct drawer search.
4. Entity extraction caught sentence-starters like "When", "The",
"After" as proper nouns. Added _ENTITY_STOPLIST (~40 common false
positives + day/month names + role words). Real names like Igor /
Milla still survive — covered by tests.
5. CLOSETS.md drifted from the code (claimed "replaced via upsert" but
code appended; claimed BM25 hybrid that doesn't exist; claimed a
10K char hydration cap that wasn't enforced). Rewritten to describe
what actually ships, with explicit notes on the BM25 / convo-closet
follow-ups.
6. Zero tests for ~250 lines. Added tests/test_closets.py with 17 cases:
- build_closet_lines: pointer shape, header extraction, stoplist
filtering (with regression case for "When/After/The"), real-name
survival, fallback-line guarantee, drawer-ref slicing.
- upsert_closet_lines: pure overwrite semantics (regression for the
append bug), char-limit packing without splitting lines.
- purge_file_closets: scoped to source_file, doesn't touch others.
- End-to-end miner rebuild: re-mining a file with fewer topics fully
purges leftover numbered closets from the larger first run.
- _extract_drawer_ids_from_closet: parsing + dedup edge cases.
- search_memories closet-first: fallback when empty, chunk-level
hits with matched_via, no whole-file glue, max_distance enforced.
Merge resolutions: miner.py imports combined NORMALIZE_VERSION/mine_lock
from develop with the closet helpers from this branch. process_file
auto-merged cleanly (closet block sits inside develop's lock body).
724/724 tests pass. ruff + format clean under CI-pinned 0.4.x.
The save hook and precompact hook were telling the agent to write
diary entries, add drawers, and add KG triples IN THE CHAT WINDOW.
Every line written stays in conversation history and retransmits on
every subsequent turn — ~$1/session in wasted tokens.
Fix: hooks now say "saved in background, no action needed" and use
decision: allow instead of block. The agent continues working without
interruption. All filing happens via the background pipeline.
Also updated hooks README with:
- Known limitation: hooks require session restart after install
- Updated cost section: zero tokens, background-only
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Non-trivial merge in convo_miner.py: this branch's _file_convo_chunks
(purge stale + upsert with normalize_version) and develop's
_file_chunks_locked (mine_lock + double-checked file_already_mined)
both touched the same critical section. Combined into a single
_file_chunks_locked helper that does lock → double-check → purge →
upsert, preserving both the multi-agent safety guarantee from #784
and the schema-rebuild contract from this PR.
Also folds develop's mine_lock import into both miner.py and
convo_miner.py alongside NORMALIZE_VERSION.
707/707 tests pass, ruff + format clean under CI-pinned 0.4.x.
Without this, the strip_noise improvement only helps new mines. Every
user who had already mined Claude Code JSONL sessions would keep their
noise-polluted drawers forever, because convo_miner's file_already_mined
skip short-circuits before re-processing.
Adds a versioned schema gate so upgrades propagate silently:
- palace.NORMALIZE_VERSION=2 — bumped when the normalization pipeline
changes shape (this PR's strip_noise is the v1→v2 bump).
- file_already_mined now returns False if the stored normalize_version
is missing or less than current, triggering a rebuild on next mine.
- Both miners stamp drawers with the current normalize_version.
- convo_miner now purges stale drawers before inserting fresh chunks
(mirrors miner.py's existing delete+insert), extracted into
_file_convo_chunks helper to keep mine_convos under ruff's C901 limit.
User experience: upgrade mempalace, run `mempalace mine` as usual, old
noisy drawers get silently replaced with clean ones. No erase needed,
no "you need to rebuild" changelog footgun.
Tests:
- test_file_already_mined_returns_false_for_stale_normalize_version —
pins the version gate contract for missing/v1/current.
- test_add_drawer_stamps_normalize_version — fresh project-miner drawers
carry the field.
- test_mine_convos_rebuilds_stale_drawers_after_schema_bump — end-to-end
proof that a pre-v2 palace gets silently cleaned on next mine, with
orphan drawers purged and NOT skipped.
Existing test_file_already_mined_check_mtime updated to include the
new field; all other tests unaffected.
The initial strip_noise() regressed on three fronts when audited against
adversarial user content — each verified with executable repros against
the cherry-picked code:
1. `<tag>.*?</tag>` with re.DOTALL span-ate across messages: one
stray unclosed <system-reminder> anywhere in a session merged with
the next closing tag, silently deleting everything between them
(including full assistant replies).
2. `.*\(ctrl\+o to expand\).*\n?` nuked entire lines of user prose
whenever a user happened to document the TUI shortcut.
3. `Ran \d+ (?:stop|pre|post)\s*hook.*` with IGNORECASE ate the
second sentence from "our CI has a stop hook ... Ran 2 stop hooks
last week" — legitimate user commentary.
These are unambiguous violations of the project's "Verbatim always"
design principle.
Fixes:
- All tag patterns are now line-anchored (`(?m)^(?:> )?<tag>`) and their
body forbids crossing a blank line (`(?:(?!\n\s*\n)[\s\S])*?`), so a
dangling open tag cannot eat neighboring messages.
- `_NOISE_LINE_PREFIXES` are line-anchored and case-sensitive — user
prose mentioning "CURRENT TIME:" mid-sentence is preserved.
- Hook-run chrome requires `(?m)^`, explicit hook names (Stop,
PreCompact, PreToolUse, etc.), and no IGNORECASE.
- "… +N lines" is line-anchored.
- "(ctrl+o to expand)" only matches Claude Code's actual collapsed-
output chrome shape `[N tokens] (ctrl+o to expand)`; a bare
parenthetical in user prose stays intact.
Scope:
- `strip_noise()` is no longer called on every normalization path.
Only `_try_claude_code_jsonl` invokes it, per-extracted-message — so
Claude.ai exports, ChatGPT exports, Slack JSON, Codex JSONL, and
plain text with `>` markers pass through fully verbatim. Per-message
application also makes span-eating structurally impossible.
Tests:
- 15 new tests in test_normalize.py pin the boundary: 6 guard user
content that must survive (each of the adversarial repros), 9 assert
real system chrome is still stripped. All pass; full suite 702 pass
(2 failures are the unrelated pre-existing version.py bug, cleared
by #820).
Known limitation (not fixed here): convo_miner.py does not delete
drawers on re-mine, so transcripts mined before this PR keep noise-
filled drawers until the user manually erases + re-mines. Proper fix
needs a schema-version field on drawer metadata + re-mine trigger —
out of scope for this PR.
Adding the per-file lock + double-checked file_already_mined() in the
previous commit pushed mine_convos cyclomatic complexity from 25 to 26,
just over ruff's max-complexity threshold. Hoist the locked critical
section into _file_chunks_locked() so the outer loop stays within
budget. No behavior change.
This PR introduces a standard SECURITY.md policy file to the repository.
While reviewing the codebase, I noticed there wasn't a defined channel for the private, responsible disclosure of security vulnerabilities. Adding this policy helps protect the project by guiding researchers to report bugs privately rather than in public issues.
I highly recommend merging this and enabling GitHub's "Private Vulnerability Reporting" feature in your repository settings. I currently have some security findings I would like to share with the maintainers securely once a private channel or contact method is established.
ChromaDB defaults HNSW index to L2 (Euclidean) distance, but
MemPalace scoring uses 1-distance which requires cosine (range 0-2).
Add metadata={"hnsw:space": "cosine"} to the 4 production and 3 test
call sites that were missing it.
Closes#218
Adds mempalace/closet_llm.py as an OPTIONAL path for richer closet
generation. Regex closets remain the default and cover the local-first
promise; users who want LLM-quality topics can bring their own endpoint.
Configuration (env or CLI flag):
LLM_ENDPOINT — OpenAI-compatible base URL (required)
LLM_KEY — bearer token (optional; local inference skips this)
LLM_MODEL — model name (required)
Works with Ollama, vLLM, llama.cpp servers, OpenAI, OpenRouter, and any
other provider that speaks OpenAI-compatible /chat/completions. Zero new
dependencies — uses stdlib urllib.
Replaces the original Anthropic-SDK-hardcoded version of this module
from Milla's branch (commit 935f657). Same prompt, same parsing, same
regenerate_closets flow; only the transport was generalised so the
feature doesn't lock users into a specific vendor or require API keys
for core memory operations (CLAUDE.md, "Local-first, zero API").
Includes 13 unit tests covering config resolution, request shape,
auth-header omission when no key is set, code-fence stripping, and
missing-config error path. All mocked — zero network calls in tests.
Co-Authored-By: MSL <232237854+milla-jovovich@users.noreply.github.com>
fact_checker.py verifies text for contradictions against locally stored
entities and KG facts. Catches similar-name confusion (Bob vs Bobby),
relationship mismatches (KG says husband, text says brother), and
stale facts (KG valid_from/valid_to).
No hardcoded facts. No network calls. Reads:
- ~/.mempalace/known_entities.json
- KnowledgeGraph SQLite
Usage:
from mempalace.fact_checker import check_text
issues = check_text("Bob is Alice's brother", palace_path)
# CLI
python -m mempalace.fact_checker "text" --palace ~/.mempalace/palace
Extracted from Milla's commit 935f657 which bundled this with
closet_llm (deferred) and drawer-grep (PR #791). Ported only
fact_checker.py — verified no network / API imports.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
When a closet hit leads to a source file with many drawers, grep each
chunk for query terms and return the BEST-MATCHING chunk + 1 neighbor
on each side, instead of dumping the whole file truncated at
MAX_HYDRATION_CHARS. Result now includes drawer_index and
total_drawers so callers can request adjacent drawers explicitly.
Extracted from Milla's commit 935f657 which bundled drawer-grep with
closet_llm (deferred pending LLM_ENDPOINT refactor) and fact_checker
(separate PR). Ported only the searcher.py change.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Appended from Milla's omnibus test_closets.py — covers create,
list, delete, dedup, and follow_tunnels behavior. 21/21 pass.
Co-Authored-By: MSL <232237854+milla-jovovich@users.noreply.github.com>
Adds active tunnel creation alongside passive tunnel discovery.
Passive tunnels (existing): rooms with the same name across wings.
Explicit tunnels (new): agent-created links between specific
locations. "This API design in project_api relates to the database
schema in project_database."
New functions in palace_graph.py:
- create_tunnel() — link two wing/room pairs with a label
- list_tunnels() — list all explicit tunnels, filter by wing
- delete_tunnel() — remove a tunnel by ID
- follow_tunnels() — from a room, find all connected rooms in
other wings with drawer content previews
New MCP tools:
- mempalace_create_tunnel
- mempalace_list_tunnels
- mempalace_delete_tunnel
- mempalace_follow_tunnels
Tunnels stored in ~/.mempalace/tunnels.json (persists across
palace rebuilds). Deduplicated by endpoint pair.
689/689 tests pass.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Trimmed version of Milla's omnibus test_closets.py to only cover
features present in this PR stack (#784 lock, #788 closets, this
PR's entity/BM25/diary). Strip-noise tests will land with #785;
tunnel tests will land with the tunnels PR.
16/16 pass.
Co-Authored-By: MSL <232237854+milla-jovovich@users.noreply.github.com>
Three features that close the gap between the architecture docs
and the actual codebase:
1. Entity metadata on drawers and closets
- _extract_entities_for_metadata() pulls names from known_entities.json
+ proper nouns appearing 2+ times
- Stamped as "entities" field in ChromaDB metadata
- Enables filterable search by person/project name
2. Day-based diary ingest (diary_ingest.py)
- ONE drawer per day, upserted as the day grows
- Closets pack topics atomically, never split mid-topic
- Tracks entry count in state file, only processes new entries
- Usage: python -m mempalace.diary_ingest --dir ~/summaries
3. BM25 hybrid search in searcher.py
- _bm25_score() keyword matching complements vector similarity
- _hybrid_rank() combines both signals (60% vector, 40% BM25)
- Catches exact name/term matches that embeddings miss
- Applied to both closet-first and direct drawer search paths
689/689 tests pass.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Cherry-picked the docs portion of 67e4ac6 to accompany the closet
feature. Test coverage for closets is omnibus with tests for entity
metadata and BM25 (see PR targeting those features) and will land
together in a follow-up.
Co-Authored-By: MSL <232237854+milla-jovovich@users.noreply.github.com>
- upsert_closet replaced by upsert_closet_lines: checks each topic
line individually against CLOSET_CHAR_LIMIT. If adding one line
WHOLE would exceed the limit, starts a new closet. Never splits
mid-topic.
- build_closet_lines returns a list of atomic lines (not joined text)
- Richer extraction: section headers, more action verbs, up to 3
quotes, up to 12 topics per file
- Each line is complete: topic|entities|→drawer_refs
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
The closet architecture was always part of MemPalace's design but
never shipped in the public codebase. This adds it.
Palace now has TWO collections:
- mempalace_drawers — full verbatim content (unchanged)
- mempalace_closets — compact AAAK-style index entries
How it works:
- When mining, each file gets a closet alongside its drawers
- Closet contains extracted topics, entities, quotes as pointers
- Closets pack up to 1500 chars, topics never split mid-entry
- Search hits closets first (fast, small), then hydrates the
full drawer content for matching files
- Falls back to direct drawer search if no closets exist yet
Files changed:
- palace.py: get_closets_collection(), build_closet_text(),
upsert_closet(), CLOSET_CHAR_LIMIT
- miner.py: process_file() now creates closets after drawers
- searcher.py: search_memories() tries closet-first search,
hydrates drawers, falls back to direct search
Backwards compatible — existing palaces without closets continue
to work via the fallback path. Closets are created on next mine.
689/689 tests pass.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
normalize.py now strips before filing:
- <system-reminder>, <command-message>, <command-name> tags
- <task-notification>, <user-prompt-submit-hook>, <hook_output> tags
- Hook status messages (CURRENT TIME, Checking verified facts, etc.)
- Claude Code UI chrome (ctrl+o to expand, progress bars, etc.)
- Collapsed runs of blank lines
This noise was going straight into drawers, wasting storage space
and polluting search results. strip_noise() runs on all normalized
output regardless of input format (JSONL, JSON, plain text).
689/689 tests pass.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Root cause: when multiple agents mine simultaneously, both pass
file_already_mined() check, both delete+insert the same file's
drawers, creating duplicates or losing data.
Fix: mine_lock() in palace.py — cross-platform file lock (fcntl on
Unix, msvcrt on Windows). Both miner.py and convo_miner.py now lock
per-file during the delete+insert cycle and re-check after acquiring
the lock.
Tested:
- Lock acquires and releases correctly
- Second agent blocks until first releases (0.25s wait)
- 33/33 existing tests pass
- Cross-platform: fcntl (macOS/Linux), msvcrt (Windows)
Based on v3.2.0 tag.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix: disambiguate hook block reasons to name MemPalace explicitly (#666)
Replace "your memory system" with explicit MemPalace references and
tool names (mempalace_diary_write, mempalace_add_drawer, mempalace_kg_add)
in stop and precompact hook block reasons. This prevents Claude Code from
misinterpreting the hook as a native auto-memory save instruction.
Updated in both Python (hooks_cli.py) and standalone shell scripts.
Also fix CONTRIBUTING.md Getting Started to show the fork-first workflow,
matching the PR Guidelines section.
* fix: remove chromadb <0.7 upper bound — blocks 1.x installs
The current constraint `chromadb>=0.5.0,<0.7` forces pip to install
chromadb 0.6.x, but palaces created with chromadb 1.x (which is what
the mempalace dev environment actually uses — 1.5.7 per uv.lock) have
an incompatible SQLite schema. Specifically, chromadb 0.6.x fails with
`KeyError: '_type'` when opening a collection written by 1.x.
This means a fresh `pip install mempalace` gives users a chromadb
version that cannot read palaces created in the maintainer's own
environment. The fix removes the upper bound so pip can resolve to the
current stable chromadb release.
Reproduction:
python3 -m venv .venv && source .venv/bin/activate
pip install mempalace # installs chromadb 0.6.3
# Try opening a palace created with chromadb 1.x:
# -> _get_collection() returns None, tool_status() returns "No palace found"
pip install chromadb==1.5.7 # force upgrade
# -> tool_status() returns real data (26k drawers in our case)
---------
Co-authored-by: z3tz3r0 <kittipan.wang@gmail.com>
Co-authored-by: AlyciaBHZ <50111876+AlyciaBHZ@users.noreply.github.com>
Co-authored-by: Ben Sigman <1872138+bensig@users.noreply.github.com>
* fix: parse Claude.ai privacy export with messages key and sender field (#677)
The privacy-export branch in _try_claude_ai_json only checked for the
"chat_messages" key, missing exports that use "messages" instead. It
also only read the "role" field while real privacy exports use "sender".
Both gaps caused the file to fall through to plain-text, producing a
single giant drawer.
Changes:
- Accept "messages" alongside "chat_messages" in the conversation-object
guard and inner extraction.
- Accept "sender" alongside "role" as the author field.
- Fall back to a top-level "text" key when content blocks are empty.
- Produce one transcript per conversation instead of concatenating all
conversations into a single blob.
- Extract shared logic into _collect_claude_messages helper.
- Add 6 regression tests covering each variant.
* style: apply ruff format to normalize.py
* fix: guard against null text field in Claude.ai export parsing
item.get("text", "").strip() crashes when "text" is explicitly null
in the JSON (legal and observed in some exports). Use
(item.get("text") or "").strip() and add a regression test.
---------
Co-authored-by: Igor Lins e Silva <4753812+igorls@users.noreply.github.com>
When external tools write to the palace database (CLI mining, scripts), the MCP server's cached ChromaDB collection becomes stale — its HNSW index doesn't know about new vectors. Develop already invalidates on inode changes (catches rebuilds) but not on mtime changes (misses in-place writes).
This PR:
- Adds st_mtime tracking alongside st_ino in _get_client; invalidates the cached client on either change.
- Adds the mempalace_reconnect MCP tool for explicit cache flush.
Original author: @jphein (#663). Original approval: @Ari4ka.
Skips test_missing_db_invalidates_cache on Windows (ChromaDB holds chroma.sqlite3 open).
'(r)roject' had a duplicate 'r', making it read as '(r)roject'
instead of the intended '(r)project'.
Small UX fix — no behavior change.
Co-authored-by: Arnold Wender <arnold.wender@gmail.com>
Full changelog from git history and merged PRs:
- v3.0.0 (2026-04-06): initial public release
- v3.1.0 (2026-04-09): 80+ commits, security hardening, Windows compat, tests 20→92
- Unreleased/v3.2.0: 50+ commits, i18n, backend seam, migrate command, more security
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- query_sanitizer: require matching quote pair in _strip_wrapping_quotes
- query_sanitizer: re-check MIN_QUERY_LENGTH after trim in tail_sentence path
- migrate: neutral confirmation message accurate for both migrate and repair
- cli: os.path.normpath instead of rstrip to handle '/' root edge case
Igor Lins e Silva