Commit Graph

777 Commits

Author SHA1 Message Date
mvalentsev 0a62658051 fix(mcp): drain KG cache on tool_reconnect
tool_reconnect cleared ChromaDB caches but left _kg_by_path entries
intact. After an external replacement of knowledge_graph.sqlite3 the
server kept serving the old open sqlite3.Connection, returning stale
results.

Now iterate _kg_by_path under _kg_cache_lock, call close() best-effort,
and clear the dict so the next tool call reopens the KG from disk.
Two new tests in TestKGLazyCache verify cache invalidation and that a
failing close() does not block the clear.
2026-05-03 17:43:00 +05:00
mvalentsev 19f8a4ff68 style(mcp): drop issue-tracker comments from KG cache block
Inline comments referencing #1136 and #540 add no information the
identifiers do not already convey. PR description carries the context;
code stays quiet.
2026-05-03 17:43:00 +05:00
mvalentsev 84f9726a39 test(mcp): fix Windows subprocess env in KG lazy-init test
Passing a stripped env dict without SYSTEMROOT/WINDIR breaks Python
bootstrap on Windows (_Py_HashRandomization_Init). Inherit the parent
env and strip MEMPAL* vars instead, then override HOME/USERPROFILE to
the tmp dir.
2026-05-03 17:43:00 +05:00
mvalentsev c69a622a18 test(mcp): add multi-tenant and lazy-init tests for KG (#1136)
TestKGLazyCache covers the scenarios behind the lazy per-path refactor:

- test_lazy_init_no_import_side_effect: a fresh subprocess import does
  not create ~/.mempalace/knowledge_graph.sqlite3 (what closed PR #167
  was aiming at).
- test_get_kg_returns_same_instance: two _get_kg() calls under the same
  resolved path return the same object, cache has one entry.
- test_get_kg_different_paths_different_instances: rotating env var
  produces distinct KGs.
- test_multi_tenant_env_switch: the exact scenario from #1136 — write
  under path A, query under path B returns empty, switching back to A
  sees the fact.
- test_cache_thread_safe: 16 threads racing _get_kg() end up with one
  shared instance and one cache entry.
2026-05-03 17:43:00 +05:00
mvalentsev 9e730098e9 test(mcp): migrate _kg monkeypatches to _get_kg (#1136)
Direct module-attribute patching of _kg is obsolete after the lazy
cache refactor. Switch test helpers to patch _get_kg instead so the
fixture KG replaces the factory rather than a now-missing singleton.

- tests/test_mcp_server.py: _patch_mcp_server helper
- tests/benchmarks/test_mcp_bench.py: _patch_mcp_config helper
- tests/benchmarks/test_memory_profile.py: inline patch in test_tool_status_repeated_calls
2026-05-03 17:43:00 +05:00
mvalentsev beac5d9954 refactor(mcp): replace eager _kg with lazy per-path cache (#1136)
Swap the module-level KnowledgeGraph singleton for a lazy, per-path
cache keyed by the resolved sqlite path. Import no longer creates a
sqlite file as a side effect, and MCP servers started with --palace
now route KG calls to the correct tenant when MEMPALACE_PALACE_PATH
changes between calls, matching the per-call behavior of _get_client()
on the ChromaDB side.

Default-path behavior is preserved: without --palace at startup, KG
stays on DEFAULT_KG_PATH regardless of env var. The "no --palace but
env var set" case is #540's scope and is not changed here.
2026-05-03 17:43:00 +05:00
Igor Lins e Silva 1888b671e2 Merge pull request #1321 from MemPalace/fix/1313-init-palace-flag
fix(cli): honor --palace flag in cmd_init (#1313)
2026-05-03 03:54:06 -03:00
Igor Lins e Silva a91b7ee5c2 test(cli): prime monkeypatch undo so palace env doesn't leak
monkeypatch.delenv(name, raising=False) on a missing key registers no
undo entry, so the env var cmd_init writes leaked into test_config_from_file
on Python 3.13 / Windows / macOS.

Prime the slot with setenv before delenv so teardown rolls back the write.
2026-05-03 06:27:37 -03:00
Igor Lins e Silva 5380189f82 Merge pull request #1320 from MemPalace/fix/1314-kg-temporal-params
fix(mcp): forward valid_to and source params in kg_add/kg_invalidate (#1314)
2026-05-03 03:51:29 -03:00
Igor Lins e Silva 0e65c54978 docs(mcp): drop §5.5 from kg_add docstring/schema
The repo's anti-jargon meta-test bans §N markers outside the
sources/backends allowlist. mcp_server.py isn't allowlisted, so the
"RFC 002 §5.5" references added in this PR turned the test red.
Trim to "RFC 002" — section number isn't load-bearing for the description.
2026-05-03 06:28:12 -03:00
Igor Lins e Silva 2ad379b547 Merge pull request #1306 from MemPalace/feat/hybrid-candidate-union
feat(searcher): candidate_strategy="union" — BM25 candidates joined with vector pool before hybrid rerank
2026-05-03 03:40:51 -03:00
Igor Lins e Silva 3eb7980e55 fix(searcher): address Copilot review on #1306
- Dedup union candidates by (full_path, chunk_index), not basename —
  two files sharing a basename in different dirs no longer collide,
  and a vector hit on chunk N of a file no longer blocks BM25 from
  contributing chunk M of the same file.
- Validate candidate_strategy at the top of search_memories so invalid
  values fail consistently, not only when the call routes through the
  vector path.
- Trim hits back to n_results after the union+rerank pool grows;
  preserves the existing search_memories size contract that the MCP
  limit parameter is built on.
- Skip BM25-only injection when max_distance > 0.0; BM25-only
  candidates carry distance=None and would silently bypass the
  caller's strict vector-distance threshold.

Adds 4 tests covering: validation under vector_disabled, n_results
trim, max_distance honoring, and basename-collision dedup.
2026-05-03 06:09:10 -03:00
Igor Lins e Silva 3e6f6480c0 Merge pull request #1325 from MemPalace/security/mcp-omit-absolute-paths
fix(mcp): omit absolute filesystem paths from MCP tool responses
2026-05-03 03:20:11 -03:00
Igor Lins e Silva 7fc260f752 fix(mcp): basename source_file in tool_get_drawer responses
The MCP `mempalace_get_drawer` tool returned the entire raw drawer
metadata blob to any connected client, and the `source_file` field
in that blob is the absolute filesystem path written by the miners
(`miner.py`, `convo_miner.py` — `source_file = str(filepath)`). On
a single-user local deployment this is self-disclosure, but in
nested-agent or multi-server MCP topologies the client is a separate
trust domain and the host's directory layout has no documented
client-side use.

Mirror the mitigation that `searcher.search_memories()` already applies
on its own return path: reduce `source_file` to its basename via
`Path(source_file).name` before handing the metadata to the client.
Citations still work — the directory layout does not leak.

Companion to #1 (omit palace_path from tool_status). Same threat class,
different surface:

- mempalace_status — palace dir path     → fixed in #1
- mempalace_get_drawer — per-drawer source_file path → this PR

Other read tools were audited and do not leak host paths:
- mempalace_search    — already basenames source_file
- mempalace_list_drawers — returns wing/room/preview only
- mempalace_diary_read   — date/timestamp/topic/content only
- mempalace_reconnect    — success/message/drawers only
- mempalace_kg_*         — entity/predicate strings, counts
- mempalace_check_duplicate — wing/room/preview only

Changes:
- mempalace/mcp_server.py: tool_get_drawer() now basenames metadata.source_file
- tests/test_mcp_server.py: regression test asserting the absolute path
  and its parent directory do not appear anywhere in the response
- website/reference/mcp-tools.md: clarify the documented return shape
2026-05-03 05:58:46 -03:00
icciAaron b2f259c253 fix(mcp): omit palace_path from tool_status responses (+ docs)
The MCP `mempalace_status` tool was returning the server's absolute
`_config.palace_path` to any connected client on both the main
(ChromaDB-backed) path and the sqlite fallback path that runs when
HNSW divergence is detected (#1222). On a single-user local deployment
this is self-disclosure, but in nested-agent or multi-server MCP
topologies the client is a separate trust domain and the absolute
path has no documented client-side use.

Clients that legitimately need the palace path continue to have three
documented channels: the `MEMPALACE_PALACE_PATH` env var (primary) or
its legacy `MEMPAL_PALACE_PATH` alias, the `~/.mempalace/config.json`
file, and the `--palace` CLI flag on most subcommands.

Also corrects stale docs that claimed `mempalace_reconnect` returned a
`palace_path` field; the code returns `{success, message, drawers,
vector_disabled[, vector_disabled_reason]}` on success, plus a no-palace
shape and an exception shape.

- mempalace/mcp_server.py: drop palace_path from tool_status() and
  _tool_status_via_sqlite() result dicts
- website/reference/mcp-tools.md: update documented return shapes for
  mempalace_status (fix) and mempalace_reconnect (stale-docs correction)

Authored-by: Aaron Salsitz (ICCI LLC, @icciaaron). Claude Code was used
as an authoring and review-orchestration tool, with human-in-the-loop
oversight at every step: Aaron wrote the prompts, reviewed each draft,
called for three independent review passes (drafting / post-rebase
technical / CISA-aligned disclosure-leak), and verified the final patch
behavior before commit.
2026-05-03 05:58:46 -03:00
Igor Lins e Silva 6f88b2a34e Merge pull request #1322 from MemPalace/fix/1121-1132-1263-client-quarantine
fix(backends/chroma): wire quarantine_stale_hnsw into _client() (#1121 #1132 #1263)
2026-05-03 03:18:28 -03:00
Igor Lins e Silva a690eb398f Merge pull request #1323 from MemPalace/fix/1243-diary-case-insensitive
fix(mcp): case-insensitive agent name in diary read/write (#1243)
2026-05-03 03:18:11 -03:00
Igor Lins e Silva 339924a387 fix(cli): cmd_compress writes to mempalace_closets (#1244) (#1319)
* fix(cli): write compress output to mempalace_closets so palace can read them (#1244)

`cmd_compress` was writing AAAK-compressed drawers to a `mempalace_compressed`
collection, but every read path (`palace.get_closets_collection`,
`searcher.py`, `repair.py`) reads from `mempalace_closets`. Result: for
non-mined palaces (or any palace where the user ran `mempalace compress`
expecting to backfill the closet/index layer), the compressed output was
silently invisible — written to a collection nothing else opens.

Fix the writer rather than renaming the readers: "closets" is the
user-visible feature name baked into the public API
(`get_closets_collection`), the searcher hybrid path, repair/HNSW
diagnostics, and docs. Renaming the readers would churn 15+ call sites
and the README for no benefit. The compressed AAAK strings are exactly
what closets are conceptually — compact pointers scanned by an LLM to
locate the right drawer — so they belong in `mempalace_closets`.

Tests:
- Update `test_cmd_compress_stores_results` to assert the collection
  name passed to `get_or_create_collection` is `mempalace_closets`.
- Add `test_cmd_compress_output_readable_via_get_closets_collection`:
  end-to-end with a real ChromaBackend, seed a drawer, run cmd_compress,
  then read back via the same `get_closets_collection` helper that
  palace.py / searcher use. Regression test for the wrong-collection
  bug.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* style: ruff format cli.py (#1244)

CI requires ruff format --check on the whole touched file. Pre-existing drift, no logic change.

* style: ruff format tests/test_cli.py (PR #1319)

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-03 03:17:45 -03:00
igorls 2397481158 style: ruff format tests/test_mcp_server.py (PR #1323) 2026-05-02 23:00:10 -03:00
igorls f854d86d2f style: ruff format tests/test_backends.py (PR #1322) 2026-05-02 23:00:08 -03:00
igorls 2857948c1e style: ruff format tests/test_cli.py (PR #1319) 2026-05-02 23:00:07 -03:00
igorls 6ffbf6ffc3 style: ruff format test_mcp_server.py (PR #1320) 2026-05-02 22:59:50 -03:00
igorls b4a9f2adf2 style: ruff format touched files (PR #1322)
CI requires whole-file format on touched files; pre-existing drift only.
2026-05-02 22:58:57 -03:00
igorls 4b0fc44451 style: ruff format cli.py (#1244)
CI requires ruff format --check on the whole touched file. Pre-existing drift, no logic change.
2026-05-02 22:58:45 -03:00
Igor Lins e Silva e9222b4c7b fix(mcp): case-insensitive agent name in diary_write/diary_read (#1243)
`tool_diary_write` stored the `agent` metadata verbatim after `sanitize_name`
(which preserves case), while `tool_diary_read` filtered by exact match —
so writing as "Claude" and reading as "claude" silently returned zero rows.

Both endpoints now lowercase `agent_name` immediately after sanitization.
The default per-agent wing slug is also stable across casings since it's
derived from the same normalized form.

Behavior change: entries written prior to this fix under mixed-case agent
names will not match the new lowercase filter; documented under v3.3.5
in CHANGELOG with a `mempalace repair` pointer.

Adds a regression test (`test_diary_read_case_insensitive_agent`) and
updates the existing `test_diary_write_and_read` to assert the new
lowercase agent identity.

Closes #1243

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-02 22:57:09 -03:00
igorls 10733f1df4 fix(backends/chroma): wire quarantine_stale_hnsw into _client() to prevent SIGSEGV on stale HNSW (#1121, #1132, #1263)
PR #1173 wired quarantine_stale_hnsw into the static make_client() helper
but not into the instance _client() method. As a result every non-MCP
entry point (CLI mining, search, repair, status) — which all use
get_collection / _get_or_create_collection / _client() — skipped the
cold-start quarantine pass and could SIGSEGV on a stale HNSW segment
left over from a partial flush, replicated palace, or crashed-mid-write.

Refactor: extract the (_fix_blob_seq_ids + gated quarantine_stale_hnsw)
pre-open pass into a single private static helper
ChromaBackend._prepare_palace_for_open(). Both make_client() and
_client() now route through it, so the _quarantined_paths once-per-
palace-per-process gate is preserved (no runtime thrash on hot paths)
and behaviour stays identical — the fix is purely about extending the
existing protection to the path that was missing it.

Tests:

- test_client_quarantines_corrupt_segment_on_first_open mirrors the
  existing make_client test and verifies _client() actually renames a
  corrupt segment on first open.
- test_client_quarantines_only_on_first_call_per_palace verifies the
  cache gate prevents re-running quarantine across repeated _client()
  calls — important because _client() is hit on every backend op.

Closes #1121. Closes #1132. Closes #1263.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-02 22:56:36 -03:00
Igor Lins e Silva 01b3183e5d fix(cli): honor --palace flag in cmd_init (#1313)
cmd_init was instantiating MempalaceConfig() unconditionally, ignoring
args.palace and always writing the palace under ~/.mempalace. Mirror
the env-var pattern used by mcp_server.py (and consistent with how
cmd_mine / cmd_status / cmd_search resolve --palace) so every
downstream read of cfg.palace_path inside cmd_init — Pass 0,
cfg.init(), and the post-init mine — routes to the user-specified
location.

Adds tests/test_cli.py::test_cmd_init_honors_palace_flag covering the
regression: asserts Pass 0 receives the --palace value (not
~/.mempalace) and that MEMPALACE_PALACE_PATH is set in os.environ.

Closes #1313.
2026-05-02 22:56:31 -03:00
Igor Lins e Silva e4e25ed186 fix(mcp): forward valid_to and source params in kg_add/kg_invalidate (#1314)
`tool_kg_add` previously accepted only `valid_from` and `source_closet`,
silently dropping `valid_to`, `source_file`, and `source_drawer_id` at
the MCP boundary. Backfilling already-ended historical facts therefore
collapsed to "still current," and adapter provenance never reached
the SQLite layer even though `KnowledgeGraph.add_triple` already
supported every column.

`tool_kg_invalidate` returned the literal string `"today"` whenever the
caller omitted `ended`, hiding the actual stamped date from anyone trying
to verify what got persisted.

Changes:
- Extend `tool_kg_add` signature + MCP input_schema with `valid_to`,
  `source_file`, `source_drawer_id`; forward all of them to
  `_kg.add_triple` and to the WAL log.
- Resolve `ended` to `date.today().isoformat()` in `tool_kg_invalidate`
  before logging / returning, so the response always reports the actual
  date stored in `valid_to`.
- Add regression tests for valid_to round-trip, source_file /
  source_drawer_id provenance, and the resolved-ended-date contract.
- Leave TODO(#1283) markers so the open ISO-8601 validation PR can drop
  `validate_iso_date` over `valid_from` / `valid_to` / `ended` cleanly.

The underlying `KnowledgeGraph.add_triple` already accepted these
kwargs (RFC 002 §5.5) — only the MCP edge needed wiring up.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-02 22:54:32 -03:00
Igor Lins e Silva cbd6e5d65d fix(cli): write compress output to mempalace_closets so palace can read them (#1244)
`cmd_compress` was writing AAAK-compressed drawers to a `mempalace_compressed`
collection, but every read path (`palace.get_closets_collection`,
`searcher.py`, `repair.py`) reads from `mempalace_closets`. Result: for
non-mined palaces (or any palace where the user ran `mempalace compress`
expecting to backfill the closet/index layer), the compressed output was
silently invisible — written to a collection nothing else opens.

Fix the writer rather than renaming the readers: "closets" is the
user-visible feature name baked into the public API
(`get_closets_collection`), the searcher hybrid path, repair/HNSW
diagnostics, and docs. Renaming the readers would churn 15+ call sites
and the README for no benefit. The compressed AAAK strings are exactly
what closets are conceptually — compact pointers scanned by an LLM to
locate the right drawer — so they belong in `mempalace_closets`.

Tests:
- Update `test_cmd_compress_stores_results` to assert the collection
  name passed to `get_or_create_collection` is `mempalace_closets`.
- Add `test_cmd_compress_output_readable_via_get_closets_collection`:
  end-to-end with a real ChromaBackend, seed a drawer, run cmd_compress,
  then read back via the same `get_closets_collection` helper that
  palace.py / searcher use. Regression test for the wrong-collection
  bug.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-02 22:54:14 -03:00
lcatlett 2d50b214d4 fix(hooks): use is_dir() for palace root check (review feedback)
Both @igorls and the Qodo bot flagged that `_palace_root_exists()` used
`Path.exists()`, which returns True for a regular file. A stray file at
`~/.mempalace` would let the kill-switch be bypassed and crash later in
`STATE_DIR.mkdir()` with NotADirectoryError.

Switched to `Path.is_dir()`. Also fold `_log()`'s inline check through
`_palace_root_exists()` so both kill-switch sites use the same predicate.

New test pins the behavior: a regular file at the palace root path is
treated as absent (hook short-circuits, _log does not crash, the stray
file is left untouched).
2026-05-02 20:37:47 -04:00
lcatlett 8472d553a3 fix(hooks): treat absent ~/.mempalace as auto-save off
When the user removes ~/.mempalace/ (a strong "do not auto-capture"
signal), the next hook fire would silently recreate the entire dir
hierarchy and ingest existing transcripts:

1. _log() at hooks_cli.py:148 unconditionally calls
   STATE_DIR.mkdir(parents=True, exist_ok=True), so the act of
   writing the hook log line recreated ~/.mempalace/hook_state/
2. With no config file present, hook_stop_auto_save and
   hook_precompact_auto_save defaulted to True (no override to read)
3. The full save path then ran, materializing palace/, wal/,
   knowledge_graph.sqlite3, and N drawers from existing transcripts
   in ~/.claude/projects/*.jsonl

All four entry points (hook_stop, hook_precompact, hook_session_start,
and _log itself) now check a new PALACE_ROOT = Path.home() / ".mempalace"
constant first and short-circuit (returning {} on stdout, never logging)
when the dir is absent. The user-removable directory is now a kill-switch.

Five unit tests in tests/test_hooks_cli.py cover: hook_stop /
hook_precompact / hook_session_start do not create the dir when absent;
_log() does not create it when absent; existing dir proceeds normally
(regression).

Caught in the wild on a downstream fork: ~146 drawers materialized in
under a second after a deliberate `rm -rf ~/.mempalace/`, into a planning
session that was explicitly not meant to be captured.
2026-05-02 20:33:58 -04:00
Mikhail Valentsev d07b730f08 fix(hooks): quote CLAUDE_PLUGIN_ROOT / CODEX_PLUGIN_ROOT in hooks.json (#1076) (#1077)
Shell splits hook command on whitespace after variable expansion, breaking
paths with spaces (e.g. C:\Users\Richard M on Windows). Wrapping the path
in double quotes preserves the token boundary.

Fixes the reported Stop/PreCompact pair in .claude-plugin/hooks/hooks.json
and applies the same fix to .codex-plugin/hooks.json (SessionStart/Stop/
PreCompact), which carries the identical bug.
2026-05-02 21:25:11 -03:00
Igor Lins e Silva 6509071b8e feat(searcher): add candidate_strategy="union" for vector∪BM25 reranking pool
Default search behavior is unchanged. Opt-in candidate_strategy="union"
also pulls top-K BM25-only candidates from sqlite FTS5 and merges them
into the rerank pool, catching docs with strong BM25 signal that the
vector index didn't surface in the over-fetch window.

Motivation
----------
The current hybrid path gathers candidates from the vector index only
(n_results * 3 over-fetch), then BM25-reranks within them. When the
query embeds close to the wrong content semantically, the right doc
never enters the rerank pool — *no matter how wide the over-fetch*.
Tested on a ~6K-document mixed corpus (knowledge prose + short structured
records): at *30x* over-fetch (~5% of the corpus) the target doc still
didn't surface for narrative-shaped queries targeting terminology guides.
Wider over-fetch isn't the answer; widening the pool's *source* is.

Concrete failure mode: a narrative-shaped query embeds close to records
sharing the same operational vocabulary (other narrative entries in the
corpus). A terminology / style guide is BM25-strong for the query
(rare keywords the guide repeats) but vector-distant. Vector-only
candidates don't include it; BM25 never gets to rerank it. The hybrid
path produces 0.00 recall on a probe that pure BM25 alone scores 1.00 —
the hybrid is worse than its component on the same input.

Behavior change
---------------
* New parameter ``candidate_strategy: str = "vector"`` on ``search_memories``.
  - ``"vector"`` (default): historical behavior, no change.
  - ``"union"``: also fetch top ``n_results * 3`` candidates via the
    existing ``_bm25_only_via_sqlite`` helper, dedupe by source_file,
    merge into the rerank pool. BM25-only candidates carry
    ``distance=None`` so they're scored on BM25 contribution alone
    (vec_sim coerces to 0).
* ``_hybrid_rank`` now handles ``distance=None`` explicitly, scoring
  such candidates as vector-unknown (vec_sim=0) rather than treating
  it as max-distance via shim.
* New strategies register via ``_CANDIDATE_MERGERS``; dispatch is in
  ``_apply_candidate_strategy`` so ``search_memories`` stays under the
  C901 complexity ceiling.

Bench numbers (~6K-doc internal mixed corpus, recall@10, 5 probes spanning
policy-exception lookup, temporal-decay, style retrieval, set-difference,
and pattern-recognition):

                              baseline ("vector")   "union"
  policy-exception probe        0.00                  0.50    +0.50
  temporal-decay probe          0.17                  0.50    +0.33
  style-retrieval probe         0.00                  1.00    +1.00 (PASSES)
  set-difference probe          0.00–0.06             0.06–0.09  ~
  pattern-recog probe           0.64 (stable)         0.50–0.71  variance, typ. +0.07
  macro recall                  0.16–0.17             0.51–0.56  +0.34 to +0.40

The pattern-recog variance points at a related issue worth a separate PR:
``_hybrid_rank`` computes BM25 IDF over the candidate set. Adding new
candidates re-normalizes BM25 for *existing* candidates non-monotonically.
Stable corpus-wide BM25 would remove this. Out of scope here.

Tests
-----
``tests/test_hybrid_candidate_union.py`` (6 tests, all pass):
- default behavior unchanged (explicit ``"vector"`` matches default)
- ``"union"`` surfaces a BM25-strong vector-distant doc
- ``"union"`` doesn't drop docs ``"vector"`` would have found
- empty-palace handling
- invalid ``candidate_strategy`` raises
- ``_hybrid_rank`` tolerates ``distance=None``

Existing ``test_hybrid_search.py`` (5) and ``test_searcher.py`` (27) pass.

Performance note
----------------
Each ``"union"`` query adds one sqlite open + FTS5 MATCH + metadata
fetch (via the existing ``_bm25_only_via_sqlite`` helper, which already
runs as the ``vector_disabled`` fallback path so the code is
well-trodden). Per-query overhead is small but unmeasured at corpus
scale. Default stays ``"vector"`` until a maintainer characterizes the
cost.
2026-05-02 00:50:19 -03:00
Igor Lins e Silva 5ddaf7abf6 Merge pull request #1303 from MemPalace/fix/mcp-server-missing-embedding-function
fix(mcp_server): pass embedding_function= on collection reopen (#1299)
2026-05-01 20:28:05 -03:00
Igor Lins e Silva cd98d6674e fix(mcp_server): address copilot review on #1303
- Resolve the EF inside the two reopen branches that actually call
  `client.get_collection` / `client.create_collection`, so warm-cache
  reads stay zero-cost (no `MempalaceConfig()` / `_resolve_providers`
  on every tool call).
- Reuse `ChromaBackend._resolve_embedding_function()` instead of
  duplicating its try/except + log message + None-fallback.
- Reword the inline + CHANGELOG explanation to clarify that ChromaDB 1.x
  persists the EF *identity* (its `name()`) but not the *instance/
  configuration* — `mempalace.embedding` documents this and spoofs
  `name()` to `"default"` precisely so the identity check passes; the
  bug was the *provider list* (lazy ONNX selection) silently differing.
2026-05-01 19:46:59 -03:00
Igor Lins e Silva ac6c2b6af6 fix(mcp_server): pass embedding_function= on collection reopen (#1299)
`mcp_server._get_collection` bypassed `ChromaBackend.get_collection`
and called `client.get_collection` / `client.create_collection` without
`embedding_function=`. ChromaDB 1.x does not persist the EF identity
with the collection, so the MCP server's reopen silently bound
chromadb's built-in `DefaultEmbeddingFunction` while the miner / Stop
hook ingest path bound `mempalace.embedding.get_embedding_function()`.

On bleeding-edge interpreters (python 3.14 + chromadb 1.5.x on Apple
Silicon, per #1299) the default EF's lazy ONNX provider selection could
SIGSEGV the host process on first `col.add()`, killing the MCP stdio
server and leaving every subsequent tool call returning
`Connection closed` until Claude Code was relaunched. Reads worked
because `col.get(ids=...)` and metadata fetches don't invoke the EF;
the auto-ingest path worked because mining routes through the backend
abstraction. Diary writes were the consistent failure surface.

Resolve the EF up front (matching `ChromaBackend._resolve_embedding_function`)
and pass it into both reopen branches. Falls back to the chromadb default
only if `mempalace.embedding.get_embedding_function` itself raises.

Regression test patches the chromadb client class to capture
`embedding_function=` on every `get_collection` / `create_collection`
call from `_get_collection(create=True)` and `_get_collection()`, and
fails if any call omits it.

Follow-up to #1262 / #1289 (which fixed the metadata-mismatch SIGSEGV
path); this addresses the EF-mismatch SIGSEGV path on the same surface.
2026-05-01 19:34:38 -03:00
Igor Lins e Silva 5e540da06b Merge pull request #1289 from MemPalace/fix/mcp-server-collection-reopen-crash
fix(mcp_server): split get_or_create_collection on reopen (follow-up to #1262)
2026-04-30 22:41:24 -03:00
Igor Lins e Silva 9dd56ecb0a fix(mcp_server): split get_or_create_collection on reopen (follow-up to #1262)
#1262 split `get_or_create_collection` into `get_collection` + fallback
`create_collection` inside `ChromaBackend.get_collection`, fixing the
chromadb 1.5.x Rust-binding SIGSEGV that fires when stored collection
metadata differs from the call-site's `_HNSW_BLOAT_GUARD` payload.

The MCP server's `_get_collection(create=True)` carries the same metadata
payload at `mcp_server.py:287` and routes through chromadb's Python
client directly, bypassing the backend layer. Both `tool_add_drawer`
and `tool_diary_write` reach this site on every invocation, and the
Stop hook fires `mempalace_diary_write` at session end — which was
exactly the crash path #1089 named.

Apply the same try/except split here so legacy palaces whose stored
metadata predates the bloat-guard expansion no longer crash on the
MCP-server reopen path. Regression test patches
`get_or_create_collection` at the chromadb client class level (not the
instance — chromadb's mtime-change detection rebuilds the client between
calls, so an instance-level spy doesn't survive) and asserts the second
`_get_collection(create=True)` call never reaches it.
2026-04-30 22:35:18 -03:00
Igor Lins e Silva 73541d1606 Merge pull request #1262 from Legion345/fix/stop-hook-crash
fix(storage): stop ChromaDB from crashing when reopening an existing …
2026-04-30 22:30:08 -03:00
Igor Lins e Silva 96bb80a356 Merge pull request #1287 from messelink/fix/hnsw-divergence-scales-with-sync-threshold
fix(repair): scale HNSW divergence floor with hnsw:sync_threshold
2026-04-30 22:28:07 -03:00
Igor Lins e Silva 7bc6090026 Merge pull request #1288 from MemPalace/fix/repair-max-seq-id-blob-heuristic
fix(repair): decode BLOB embeddings.seq_id in max-seq-id heuristic (#1254)
2026-04-30 22:23:21 -03:00
Igor Lins e Silva 3b5ebcc9fc fix(repair): decode BLOB embeddings.seq_id in max-seq-id heuristic (#1254)
`_compute_heuristic_seq_id` ran `int(row[0])` directly on the result
of `MAX(e.seq_id)`. On palaces where chromadb 1.5.x has been writing
seq_ids natively (8-byte big-endian uint64 BLOB), that raises
`ValueError: invalid literal for int() with base 10: b'...'` before
the dry-run can print, leaving users with no path through the
recovery feature added in #1135 — the only documented un-poison
route for palaces hit by the original PR #664 shim bug.

Decode BLOB return values via `int.from_bytes(val, "big")` and
keep the existing `int(val)` path for INTEGER rows. Regression
test seeds a BLOB row in `embeddings.seq_id` and asserts the
heuristic surfaces the correct integer.
2026-04-30 22:04:41 -03:00
Pim Messelink 4a0f330cc1 fix(repair): scale HNSW divergence floor with hnsw:sync_threshold
The capacity probe added in #1227 hardcoded a 2,000-row floor for the
"diverged" decision. The comment justifying that number explicitly tied
it to chromadb's *default* sync_threshold of 1,000 — "Two synchronization
windows worth (2 × sync_threshold = 2000) is a safe steady-state ceiling".

#1191 then bumped sync_threshold to 50,000 via _HNSW_BLOAT_GUARD without
updating the floor. Result: any palace created with the bloat guard
flips between OK and DIVERGED on every flush cycle. Steady-state
divergence sits at 0–50K (the natural queue depth), and the 2,000 floor
trips the guardrail the moment the queue exceeds 10% of sqlite_count.
The MCP server then routes search to BM25-only and disables duplicate
detection for ~80% of the write cycle on actively-mined ≥100K palaces,
even though chromadb is behaving correctly.

This change reads the configured `hnsw:sync_threshold` from
`collection_metadata` per palace and scales the floor to 2 × that value.
The 10% relative term and the original #1222 detection capability are
unchanged — a 91%-missing-of-192K palace (the actual #1222 reproducer)
still trips, regardless of whether the collection was created with
sync_threshold=1000 or 50000.

Behavior summary:

| Collection's sync_threshold | New floor | Old floor |
|---|---|---|
| Missing (legacy palace)     | 2000      | 2000 (unchanged)
| 1000 (chromadb default)     | 2000      | 2000 (unchanged)
| 50000 (#1191 bloat guard)   | 100000    | 2000 (the bug)

Tests:
- test_capacity_status_tolerates_lag_under_large_sync_threshold (regression
  for the #1191/#1227 conflict — 100K sqlite + 50K HNSW + sync=50K → OK)
- test_capacity_status_still_flags_real_corruption_under_large_sync (#1222
  shape with bloat-guard collection — still detects corruption)
- test_capacity_status_default_threshold_when_no_sync_metadata (legacy
  palaces without the metadata row use the 2000 fallback floor)
- test_unflushed_path_also_uses_dynamic_floor (the never-flushed branch
  scales too — 30K under sync_threshold=50000 is no longer flagged)

All 18 pre-existing tests in tests/test_hnsw_capacity.py and 45 tests
in tests/test_backends.py still pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-01 00:31:47 +00:00
Arnold Wender abe85763d4 fix(kg): reject partial ISO dates to avoid silent empty result sets
Per qodo-ai review on PR #1167: sanitize_iso_date() previously accepted
YYYY and YYYY-MM, but KnowledgeGraph.query_entity() compares valid_from/
valid_to TEXT columns lexicographically against as_of. Lexicographic
comparison treats '2026-01-01' as greater than '2026' (because '-' >
end-of-string), so partial as_of values silently excluded valid facts —
re-introducing the silent-empty-results problem this PR was meant to
fix.

Tighten _ISO_DATE_RE to require YYYY-MM-DD only. Update docstring and
error message accordingly. Invert the two test cases that asserted
partials were accepted.
2026-04-30 15:21:18 +02:00
Arnold Wender 4d98b05240 fix(kg): validate ISO-8601 date formats at MCP boundary
tool_kg_query (as_of), tool_kg_add (valid_from), and tool_kg_invalidate
(ended) accepted any string and forwarded it to SQLite without format
validation. Parameterized queries prevent SQL injection, but invalid
date strings silently produce empty result sets — callers cannot
distinguish "no fact at this time" from "your date format was
unrecognized." This is especially painful for natural-language LLM
callers that synthesize dates like "March 2026" or "Jan 2025".

Add sanitize_iso_date() in config.py alongside the other input
validators. It accepts YYYY, YYYY-MM, and YYYY-MM-DD forms; passes
through None/empty; and raises ValueError with a field-named message
on anything else. Call it from the three kg MCP tool wrappers before
values reach the storage layer so the caller gets a clear error
instead of a silent miss.

Closes #1164
2026-04-30 15:21:17 +02:00
sha2fiddy db28bf1e84 fix: paginate closet_llm col.get (#1073)
Mirror the pagination pattern PR #851 landed in miner.py:status().
A single drawers_col.get(limit=total, ...) on palaces larger than
SQLite's SQLITE_MAX_VARIABLE_NUMBER (32766) crashes inside chromadb.

Fetch drawers in batch_size=5000 chunks, stepping offset until the
collection is drained. by_source aggregation semantics are preserved
exactly — grouping, wing filter, meta capture all unchanged.

Closes #1073. Related: #802, #850, #1016.
2026-04-29 19:01:54 -04:00
Legion345 d7f4638157 fix(storage): stop ChromaDB from crashing when reopening an existing palace 2026-04-28 13:08:04 -07:00
Igor Lins e Silva fdfaf017ab Merge pull request #1234 from MemPalace/feat/normalize-gemini-cli
feat(normalize): Gemini CLI session JSONL adapter
2026-04-27 20:42:06 -03:00
copilot-swe-agent[bot] e7fe6cae14 fix(normalize): discard user/gemini turns before session_metadata sentinel
Agent-Logs-Url: https://github.com/MemPalace/mempalace/sessions/4511e9aa-38e7-440e-a6f8-eda91e576f0f

Co-authored-by: igorls <4753812+igorls@users.noreply.github.com>
2026-04-27 21:41:48 +00:00
copilot-swe-agent[bot] a3e3691e86 docs(normalize): add Gemini CLI JSONL to module-level supported formats list
Agent-Logs-Url: https://github.com/MemPalace/mempalace/sessions/a32f48bb-2a78-494a-9698-e69304732d3f

Co-authored-by: igorls <4753812+igorls@users.noreply.github.com>
2026-04-27 19:00:18 +00:00