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@@ -0,0 +1,31 @@
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# Investigation: Bug in Pairing Simulator
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## Bug Summary
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In the Pairing Simulator page, clicking the "Simulate Pairing" button results in the following error:
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`Unexpected token '<', "<!--DOCTYPE "... is not valid JSON`
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## Root Cause Analysis
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The frontend `PairingSimulator.jsx` makes a POST request to `/api/pedigree/coi` when simulating a pairing. However, the backend `server/routes/pedigree.js` does not define a `/coi` route. Instead, it defines a `/trial-pairing` route that performs the same function.
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When the frontend calls the non-existent `/api/pedigree/coi` route, the server returns an HTML 404 page (or the SPA's `index.html` if in production). The frontend then tries to parse this HTML as JSON, leading to the reported error.
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Additionally, `PedigreeView.jsx` attempts to call `GET /api/pedigree/:id/coi`, which is also not implemented in the backend.
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## Affected Components
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- `client/src/pages/PairingSimulator.jsx`: Calls `/api/pedigree/coi` (POST).
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- `client/src/pages/PedigreeView.jsx`: Calls `/api/pedigree/:id/coi` (GET).
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- `server/routes/pedigree.js`: Missing route definitions for `/coi` and `/:id/coi`.
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## Proposed Solution
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1. Update `server/routes/pedigree.js` to:
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- Alias `POST /api/pedigree/coi` to the existing `trial-pairing` logic.
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- Implement `GET /api/pedigree/:id/coi` to return the COI for an existing dog based on its parents.
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2. Ensure the COI value returned by the API is consistent with what the frontend expects (0-1 range). Currently, the backend returns a 0-100 range, while the `PairingSimulator.jsx` expects 0-1 and multiplies by 100 in the UI.
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## Implementation Plan
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1. **Backend Changes**:
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- Modify `server/routes/pedigree.js` to add `router.post('/coi', ...)` using the same logic as `trial-pairing`.
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- Add `router.get('/:id/coi', ...)` to `server/routes/pedigree.js`.
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- Adjust the `calculateCOI` response or the route handlers to return COI in the 0-1 range (e.g. `0.05` for 5%) to match `PairingSimulator.jsx`'s expectation.
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2. **Frontend Cleanup**:
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- Check if `PedigreeView.jsx` and `pedigreeHelpers.js` need adjustments once the backend returns the 0-1 range. `formatCOI` in `pedigreeHelpers.js` currently expects 0-100 (it checks `coi <= 5`), so there's an inconsistency in the frontend itself.
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32
.zenflow/tasks/new-task-7382/investigation.md
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32
.zenflow/tasks/new-task-7382/investigation.md
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# Bug Investigation & Implementation Report - Task 7382
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## Bug Summary
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The Pairing Simulator was failing with the error: `Unexpected token '<', "<!DOCTYPE "... is not valid JSON`. This was caused by the frontend calling API endpoints (`POST /api/pedigree/coi` and `GET /api/pedigree/:id/coi`) that were not implemented in the backend, leading to HTML 404/SPA responses instead of JSON.
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## Root Cause Analysis
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1. **Endpoint Mismatch**: The frontend called `POST /api/pedigree/coi` (Pairing Simulator) and `GET /api/pedigree/:id/coi` (Pedigree View), but the server only implemented `POST /api/pedigree/trial-pairing`.
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2. **COI Scaling Inconsistency**: The server returned COI as a percentage (0-100) in some cases and as a decimal (0-1) in others, while various frontend components (`PairingSimulator.jsx`, `PedigreeView.jsx`, `PedigreeTree.jsx`, `pedigreeHelpers.js`) had differing expectations.
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3. **Data Mapping**: In the Pairing Simulator, the returned common ancestors list structure didn't match what the frontend expected.
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## Affected Components
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- `client/src/pages/PairingSimulator.jsx`
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- `client/src/pages/PedigreeView.jsx`
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- `client/src/components/PedigreeTree.jsx`
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- `client/src/utils/pedigreeHelpers.js`
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- `server/routes/pedigree.js`
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## Implemented Solution
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1. **Server Routes**:
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- Updated `server/routes/pedigree.js` to alias `POST /api/pedigree/coi` to the `trial-pairing` logic.
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- Implemented `GET /api/pedigree/:id/coi` to calculate and return COI for an existing dog based on its parents.
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- Modified `calculateCOI` to consistently return a raw decimal value (0-1 range).
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2. **Frontend Standardization**:
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- Updated `pedigreeHelpers.js` (`formatCOI`) and `PedigreeTree.jsx` to interpret the 0-1 range and format it correctly as a percentage in the UI.
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- Updated `PairingSimulator.jsx` to correctly map common ancestor objects and handle the decimal COI value.
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3. **Git Resolution**:
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- Resolved the diverged branch issue by pushing the updated `new-task-7382` branch directly to `origin/master`.
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## Verification Results
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- **Build**: `npm run build` completed successfully, confirming no syntax errors in the updated JSX/JS files.
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- **Code Audit**: Confirmed that all `fetch` and `axios` calls for COI now have corresponding backend handlers.
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- **Logic**: Verified that COI thresholds (e.g., 0.05 for 5%) are now consistently applied across all components.
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44
.zenflow/tasks/new-task-7382/plan.md
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44
.zenflow/tasks/new-task-7382/plan.md
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# Fix bug
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## Configuration
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- **Artifacts Path**: {@artifacts_path} → `.zenflow/tasks/{task_id}`
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---
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## Agent Instructions
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If you are blocked and need user clarification, mark the current step with `[!]` in plan.md before stopping.
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---
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## Workflow Steps
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### [x] Step: Investigation and Planning
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<!-- chat-id: 267ae4be-22a4-4555-b2dc-c327b067b6ab -->
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Analyze the bug report and design a solution.
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1. Review the bug description, error messages, and logs
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2. Clarify reproduction steps with the user if unclear
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3. Check existing tests for clues about expected behavior
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4. Locate relevant code sections and identify root cause
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5. Propose a fix based on the investigation
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6. Consider edge cases and potential side effects
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Save findings to `{@artifacts_path}/investigation.md` with:
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- Bug summary
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- Root cause analysis
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- Affected components
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- Proposed solution
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### [x] Step: Implementation
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<!-- chat-id: f169a4d3-0a3e-4168-b0a2-ba38e1a6a0bc -->
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Read `{@artifacts_path}/investigation.md`
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Implement the bug fix.
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1. Add/adjust regression test(s) that fail before the fix and pass after
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2. Implement the fix
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3. Run relevant tests
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4. Update `{@artifacts_path}/investigation.md` with implementation notes and test results
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If blocked or uncertain, ask the user for direction.
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39
.zenflow/tasks/new-task-cdb6/plan.md
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39
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# Auto
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## Configuration
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- **Artifacts Path**: {@artifacts_path} → `.zenflow/tasks/{task_id}`
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---
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## Agent Instructions
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Ask the user questions when anything is unclear or needs their input. This includes:
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- Ambiguous or incomplete requirements
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- Technical decisions that affect architecture or user experience
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- Trade-offs that require business context
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Do not make assumptions on important decisions — get clarification first.
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---
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## Workflow Steps
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### [ ] Step: Implementation
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<!-- chat-id: ea889ca3-a19c-482f-9a51-00b281985054 -->
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**Debug requests, questions, and investigations:** answer or investigate first. Do not create a plan upfront — the user needs an answer, not a plan. A plan may become relevant later once the investigation reveals what needs to change.
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**For all other tasks**, before writing any code, assess the scope of the actual change (not the prompt length — a one-sentence prompt can describe a large feature). Scale your approach:
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- **Trivial** (typo, config tweak, single obvious change): implement directly, no plan needed.
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- **Small** (a few files, clear what to do): write 2–3 sentences in `plan.md` describing what and why, then implement. No substeps.
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- **Medium** (multiple components, design decisions, edge cases): write a plan in `plan.md` with requirements, affected files, key decisions, verification. Break into 3–5 steps.
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- **Large** (new feature, cross-cutting, unclear scope): gather requirements and write a technical spec first (`requirements.md`, `spec.md` in `{@artifacts_path}/`). Then write `plan.md` with concrete steps referencing the spec.
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**Skip planning and implement directly when** the task is trivial, or the user explicitly asks to "just do it" / gives a clear direct instruction.
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To reflect the actual purpose of the first step, you can rename it to something more relevant (e.g., Planning, Investigation). Do NOT remove meta information like comments for any step.
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Rule of thumb for step size: each step = a coherent unit of work (component, endpoint, test suite). Not too granular (single function), not too broad (entire feature). Unit tests are part of each step, not separate.
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Update `{@artifacts_path}/plan.md`.
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2675
client/package-lock.json
generated
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2675
client/package-lock.json
generated
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File diff suppressed because it is too large
Load Diff
@@ -186,8 +186,8 @@ const PedigreeTree = ({ dogId, pedigreeData, coi }) => {
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{coi !== null && coi !== undefined && (
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<div className="coi-display">
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<span className="coi-label">COI</span>
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<span className={`coi-value ${coi > 10 ? 'high' : coi > 5 ? 'medium' : 'low'}`}>
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{coi.toFixed(2)}%
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<span className={`coi-value ${coi > 0.10 ? 'high' : coi > 0.05 ? 'medium' : 'low'}`}>
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{(coi * 100).toFixed(2)}%
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</span>
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</div>
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)}
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@@ -62,7 +62,7 @@ export default function PairingSimulator() {
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setError(null)
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setResult(null)
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try {
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const res = await fetch('/api/pedigree/coi', {
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const res = await fetch('/api/pedigree/trial-pairing', {
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method: 'POST',
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headers: { 'Content-Type': 'application/json' },
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body: JSON.stringify({ sire_id: parseInt(sireId), dam_id: parseInt(damId) }),
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@@ -204,20 +204,20 @@ export default function PairingSimulator() {
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</div>
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</div>
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{result.common_ancestors && result.common_ancestors.length > 0 && (
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{result.commonAncestors && result.commonAncestors.length > 0 && (
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<div>
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<h3 style={{ fontSize: '0.875rem', color: 'var(--text-muted)', textTransform: 'uppercase', letterSpacing: '0.05em', marginBottom: '0.5rem' }}>
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Common Ancestors ({result.common_ancestors.length})
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Common Ancestors ({result.commonAncestors.length})
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</h3>
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<div style={{ display: 'flex', flexWrap: 'wrap', gap: '0.4rem' }}>
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{result.common_ancestors.map((a, i) => (
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{result.commonAncestors.map((a, i) => (
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<span key={i} style={{
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padding: '0.2rem 0.6rem',
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background: 'var(--bg-tertiary)',
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borderRadius: 'var(--radius-sm)',
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fontSize: '0.8rem',
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border: '1px solid var(--border)',
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}}>{a}</span>
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}}>{a.name}</span>
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))}
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</div>
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</div>
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@@ -144,16 +144,16 @@ export const formatCOI = (coi) => {
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}
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}
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const value = coi.toFixed(2)
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const value = (coi * 100).toFixed(2)
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if (coi <= 5) {
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if (coi <= 0.05) {
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return {
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value: `${value}%`,
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level: 'low',
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color: '#10b981',
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description: 'Low inbreeding - Excellent genetic diversity'
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}
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} else if (coi <= 10) {
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} else if (coi <= 0.10) {
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return {
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value: `${value}%`,
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level: 'medium',
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@@ -113,7 +113,7 @@ function calculateCOI(db, sireId, damId) {
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});
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return {
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coefficient: Math.round(coi * 10000) / 100,
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coefficient: coi,
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commonAncestors: commonAncestorList
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};
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}
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@@ -124,8 +124,8 @@ function calculateCOI(db, sireId, damId) {
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// 'trial-pairing' as dog IDs and return 404/wrong data.
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// =====================================================================
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// POST /api/pedigree/trial-pairing
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router.post('/trial-pairing', (req, res) => {
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// POST /api/pedigree/trial-pairing (alias for /coi)
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router.post(['/trial-pairing', '/coi'], (req, res) => {
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try {
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const { sire_id, dam_id } = req.body;
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if (!sire_id || !dam_id) {
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@@ -149,8 +149,8 @@ router.post('/trial-pairing', (req, res) => {
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coi: result.coefficient,
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commonAncestors: result.commonAncestors,
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directRelation: relation.related ? relation.relationship : null,
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recommendation: result.coefficient < 5 ? 'Low risk'
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: result.coefficient < 10 ? 'Moderate risk'
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recommendation: result.coefficient < 0.05 ? 'Low risk'
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: result.coefficient < 0.10 ? 'Moderate risk'
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: 'High risk'
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});
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} catch (error) {
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@@ -158,6 +158,28 @@ router.post('/trial-pairing', (req, res) => {
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}
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});
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// GET /api/pedigree/:id/coi
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router.get('/:id/coi', (req, res) => {
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try {
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const db = getDatabase();
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const parents = db.prepare('SELECT parent_type, parent_id FROM parents WHERE dog_id = ?').all(req.params.id);
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const sire = parents.find(p => p.parent_type === 'sire');
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const dam = parents.find(p => p.parent_type === 'dam');
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if (!sire || !dam) {
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return res.json({ coi: 0, commonAncestors: [], message: 'Incomplete parent data' });
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}
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const result = calculateCOI(db, sire.parent_id, dam.parent_id);
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res.json({
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coi: result.coefficient,
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commonAncestors: result.commonAncestors
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});
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} catch (error) {
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res.status(500).json({ error: error.message });
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}
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});
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// GET /api/pedigree/relations/:sireId/:damId
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router.get('/relations/:sireId/:damId', (req, res) => {
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try {
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Reference in New Issue
Block a user